PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008240817.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 346aa MW: 38814.2 Da PI: 8.8937

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008240817.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.3	5.8e-13	273	318	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +AveYIk+Lq XP_008240817.1 273 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKDLQ 318 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.148	267	317	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.79E-16	270	334	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.86E-12	271	320	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.3E-14	272	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-11	273	323	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.8E-10	273	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048573	Biological Process	photoperiodism, flowering
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MYNGPPASNS GTSPLIQIPQ WQTEQPQFMD SNSHQNLHSQ EHQTHQPNSG LLRFRSAPSS 60 LLANFNENSD LGLIGKNPIE GSESERLFSR FANYTHTNDS DSWPSSFQEL DDKSTVTATE 120 SRMSSQRQGY SGLPPHYPRQ SSFNGSYGLV GSAAMNHHTQ PKAVHSNLVR QSSSPAGLFS 180 NSSVQNGFQF GTWNDSSNFA EILGGMRRDQ DNDGKLFSVP QNGELENRIH LLSHHLSLPK 240 TSAEIAMEKF LQLQDSVPCK VRAKRGCATH PRSIAERVRR TRISERMRKL QELVPNMDKQ 300 TNTADMLDLA VEYIKDLQKQ FKTLSDVRAN CRCLNMQKKP VSNQIV

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MYNGPPASNS GTSPLIQIPQ WQTEQPQFMD SNSHQNLHSQ EHQTHQPNSG LLRFRSAPSS  60
LLANFNENSD LGLIGKNPIE GSESERLFSR FANYTHTNDS DSWPSSFQEL DDKSTVTATE  120
SRMSSQRQGY SGLPPHYPRQ SSFNGSYGLV GSAAMNHHTQ PKAVHSNLVR QSSSPAGLFS  180
NSSVQNGFQF GTWNDSSNFA EILGGMRRDQ DNDGKLFSVP QNGELENRIH LLSHHLSLPK  240
TSAEIAMEKF LQLQDSVPCK VRAKRGCATH PRSIAERVRR TRISERMRKL QELVPNMDKQ  300
TNTADMLDLA VEYIKDLQKQ FKTLSDVRAN CRCLNMQKKP VSNQIV

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00308	DAP	Transfer from AT2G42280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008240817.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008240817.1	0.0	PREDICTED: transcription factor bHLH130-like
Swissprot	Q66GR3	1e-101	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A251N7Z8	0.0	A0A251N7Z8_PRUPE; Uncharacterized protein
STRING	XP_008240817.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5177	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	1e-103	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]