PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008240788.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

GRAS

Protein Properties

Length: 750aa MW: 84210.6 Da PI: 6.4049

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008240788.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	379.2	5e-116	377	748	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lL++cA+av+++d++ a++lL+++++++sp gd +qRla++++ +L+arla+++s++ykal +++ts ++ l+a++l+ +sP+ k+s+ XP_008240788.1 377 LRTLLISCAQAVAADDHRSANELLKKVRQHSSPFGDGTQRLAHCLADGLEARLAGTGSQIYKALVSKRTS---AADFLKAHHLYLAASPFKKISN 468 6789***********************************************************99999...9***************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 ++ N++I++ +++++rvH+iDf+i +G+QWp+L+q ++ R++gpp+lRiTg++ p++g +e++eetg+rLa +Ae+++vpfe+n+ +ak++++ XP_008240788.1 469 FVSNKTIMNLAQNATRVHVIDFGILYGFQWPTLIQRISWRDGGPPRLRITGIEFPQPGfrPAERVEETGRRLAAYAEKFNVPFEYNA-IAKNWDT 562 *****************************************************9*************************.7** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 ++leeL+++++E+l+Vn+ ++ ++lldesv+++s+r++vL+l+++++P+++++ + n++ F++rf eal ++s+lfd+le+ +pre++er+ XP_008240788.1 563 IKLEELKIDRDEVLVVNFLYRGKNLLDESVAVDSPRNRVLDLIRRINPDLFIHGIVNGAFNAPFFVTRFREALFHFSSLFDMLETVVPREDQERM 657 ******************************************************************************************* PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +E e++gre+ nv+aceg er+er et+++W+ r +aGF ++pl+ +k a +r + + + ++e+s +l++gWk+r+++++S W+ XP_008240788.1 658 LIETEIFGREALNVIACEGWERVERPETYKQWQVRNLRAGFVQLPLDRGLVKRAGEKVRSGYHKDFVIDEDSRWLLQGWKGRTVYALSTWK 748 ********************************************************99888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.58	351	728	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.7E-113	377	748	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 750 aa Download sequence Send to blast
MTMDRRLRAF SDSFNGVQLG NRVLPILSHP NIVAQSQFDS NTFLDNNYRE LNYPQPVLTP 60 NNVSSYASVS PEDDSQEDCD FSDVVLKYIN QMLMEEDMED KTCMLQESLE LQAAEKSFYE 120 VLGKKYPPSP ELHQDYAIQY GESPGDSFSG TGSNYITSTC NSGGYFSDNT LIQSPDGYLS 180 QLKGLPAYSI SQSRYGSSTR VSSLDGQVDS PSSLHMPDLN TESQSVWQFK KGVEEASRFL 240 PGETKLVVNL EANGLSAQVP KVGTNGEVVK VEKKDEGEYS PSGSRGRKNL YREDDDVEES 300 RSSKQAAVST ESTLRSELFD TVLLCSTGEG RERLESLREA LQNGMSKSVP QNGQSKGSNG 360 GKGRGKKQTG KKEVVDLRTL LISCAQAVAA DDHRSANELL KKVRQHSSPF GDGTQRLAHC 420 LADGLEARLA GTGSQIYKAL VSKRTSAADF LKAHHLYLAA SPFKKISNFV SNKTIMNLAQ 480 NATRVHVIDF GILYGFQWPT LIQRISWRDG GPPRLRITGI EFPQPGFRPA ERVEETGRRL 540 AAYAEKFNVP FEYNAIAKNW DTIKLEELKI DRDEVLVVNF LYRGKNLLDE SVAVDSPRNR 600 VLDLIRRINP DLFIHGIVNG AFNAPFFVTR FREALFHFSS LFDMLETVVP REDQERMLIE 660 TEIFGREALN VIACEGWERV ERPETYKQWQ VRNLRAGFVQ LPLDRGLVKR AGEKVRSGYH 720 KDFVIDEDSR WLLQGWKGRT VYALSTWKPA

Sequence ? help Back to Top

Protein Sequence Length: 750 aa Download sequence Send to blast

MTMDRRLRAF SDSFNGVQLG NRVLPILSHP NIVAQSQFDS NTFLDNNYRE LNYPQPVLTP  60
NNVSSYASVS PEDDSQEDCD FSDVVLKYIN QMLMEEDMED KTCMLQESLE LQAAEKSFYE  120
VLGKKYPPSP ELHQDYAIQY GESPGDSFSG TGSNYITSTC NSGGYFSDNT LIQSPDGYLS  180
QLKGLPAYSI SQSRYGSSTR VSSLDGQVDS PSSLHMPDLN TESQSVWQFK KGVEEASRFL  240
PGETKLVVNL EANGLSAQVP KVGTNGEVVK VEKKDEGEYS PSGSRGRKNL YREDDDVEES  300
RSSKQAAVST ESTLRSELFD TVLLCSTGEG RERLESLREA LQNGMSKSVP QNGQSKGSNG  360
GKGRGKKQTG KKEVVDLRTL LISCAQAVAA DDHRSANELL KKVRQHSSPF GDGTQRLAHC  420
LADGLEARLA GTGSQIYKAL VSKRTSAADF LKAHHLYLAA SPFKKISNFV SNKTIMNLAQ  480
NATRVHVIDF GILYGFQWPT LIQRISWRDG GPPRLRITGI EFPQPGFRPA ERVEETGRRL  540
AAYAEKFNVP FEYNAIAKNW DTIKLEELKI DRDEVLVVNF LYRGKNLLDE SVAVDSPRNR  600
VLDLIRRINP DLFIHGIVNG AFNAPFFVTR FREALFHFSS LFDMLETVVP REDQERMLIE  660
TEIFGREALN VIACEGWERV ERPETYKQWQ VRNLRAGFVQ LPLDRGLVKR AGEKVRSGYH  720
KDFVIDEDSR WLLQGWKGRT VYALSTWKPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	2e-47	360	749	1	379	Protein SCARECROW
5b3h_D	2e-47	360	749	1	379	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008240788.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008240788.1	0.0	PREDICTED: scarecrow-like protein 9
Refseq	XP_008240793.1	0.0	PREDICTED: scarecrow-like protein 9
Swissprot	O80933	0.0	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A251NVY7	0.0	A0A251NVY7_PRUPE; Uncharacterized protein
STRING	XP_008240788.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein