PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008240747.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 297aa    MW: 33303.9 Da    PI: 4.7862
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008240747.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.61.1e-32114170258
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                     dDgy+WrKYGqK++k+s++prsYYrCt ++C++kk+vers++dp++++itYeg H h
  XP_008240747.1 114 DDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCSAKKQVERSSDDPDTLIITYEGLHLH 170
                     8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-30103170IPR003657WRKY domain
PROSITE profilePS5081127.795108173IPR003657WRKY domain
SuperFamilySSF1182903.27E-27109170IPR003657WRKY domain
SMARTSM007741.0E-36113172IPR003657WRKY domain
PfamPF031063.7E-26114170IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEDAMGATWS DWSEEELVRE LLDNETPFFV LPEEALQSQM SVSNEDSVVN RFIPTVYSGP  60
TIKDIETALS VTTGAIQPQE LSPARLSMLE RGLSKVEHKY TLKIKSCDNG AMADDGYKWR  120
KYGQKSIKNS PNPRSYYRCT NPRCSAKKQV ERSSDDPDTL IITYEGLHLH FAYPFFPLNN  180
QAQNTSPPMK KPRNKTSQPQ AEDREHEAQE SPRSITPEPD PDLQPGPFPD PHEEFVEKEP  240
SAQGLLQDVV PFMIRNPNPS SASSNSSCSS YRSSPTSPSS LSWATSYFDV GFNHSFG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-211121701371WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008240747.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008240747.10.0PREDICTED: probable WRKY transcription factor 49
TrEMBLM5W2Y40.0M5W2Y4_PRUPE; Uncharacterized protein
STRINGXP_008240747.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71183449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.15e-58WRKY DNA-binding protein 49