PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008240681.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 171aa MW: 20100.9 Da PI: 8.7993 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 53.2 | 3.9e-17 | 12 | 53 | 3 | 44 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i n++ r+ tf kR++ i KKA ELS LCd++v++ii+ ++ XP_008240681.1 12 IPNEIARKMTFRKRKKCIYKKADELSKLCDIDVCLIIYEADQ 53 889**********************************98776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 15.222 | 2 | 54 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.7E-9 | 2 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-9 | 4 | 24 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.7E-17 | 4 | 85 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 6.53E-16 | 4 | 49 | No hit | No description |
Pfam | PF00319 | 7.3E-16 | 12 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-9 | 24 | 39 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-9 | 39 | 60 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MPPRARRSLE LIPNEIARKM TFRKRKKCIY KKADELSKLC DIDVCLIIYE ADQKKGRAIQ 60 SETWPQDSAE FNRIFNKYKA SKDIHIPGLK QNFDLSDFFN TTKKEDVDQK FENLYPTWDD 120 RIDEFSQVEL IKLIGSLEAK IQASSKKIDS MEQNRNVSKA EEHRTNQVPD Q |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 22 | 26 | RKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008240681.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008240681.1 | 1e-124 | PREDICTED: agamous-like MADS-box protein AGL82 | ||||
TrEMBL | A0A314UT73 | 3e-84 | A0A314UT73_PRUYE; Agamous-like MADS-box protein AGL82 | ||||
STRING | XP_008240681.1 | 1e-123 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14708 | 5 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 7e-20 | M-type_MADS family protein |