PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008240601.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family G2-like
Protein Properties Length: 235aa    MW: 25695.9 Da    PI: 6.2941
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008240601.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like50.25.5e-1618462755
         G2-like 27 AtPktilelmkvkgLtlehvkSHLQkYRl 55
                    AtPk +l++m+v+gLt++hvkSHLQkYRl
  XP_008240601.1 18 ATPKGVLRVMGVPGLTIYHVKSHLQKYRL 46
                    9***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.1E-151847IPR009057Homeodomain-like
TIGRFAMsTIGR015573.8E-111847IPR006447Myb domain, plants
SuperFamilySSF466893.4E-61846IPR009057Homeodomain-like
PfamPF143791.2E-2478124IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MTASSTPLRN SVDQIVGATP KGVLRVMGVP GLTIYHVKSH LQKYRLAKYL PESPADGSKD  60
EKKGSGDSLS CSDSSPGVQI NEALRMQMEV QKRLHEQLEV QRQLQMRIEA QGKYLQKIIE  120
EQEKLGGVLK GSDVLPSAED KQKSSQLETA GDASAMPSSP RKKQRVDDGL PDGCTTSNVP  180
PKADQKNEFV GQWDRDLYGS DGGFGFNLQT EFKERDGDAA QKASMELDPL CGSKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008240601.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008240601.11e-173PREDICTED: protein PHR1-LIKE 1-like isoform X2
SwissprotQ9SJW01e-54PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A251N5I01e-167A0A251N5I0_PRUPE; Uncharacterized protein
STRINGXP_008240600.11e-158(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-51G2-like family protein