PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008240600.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

G2-like

Protein Properties

Length: 289aa MW: 31469.3 Da PI: 8.0766

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008240600.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.6	2.8e-33	46	100	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl XP_008240600.1 46 KQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRL 100 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.884	43	103	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.2E-32	44	101	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.76E-17	45	100	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.7E-26	46	101	IPR006447	Myb domain, plants
Pfam	PF00249	1.5E-7	48	99	IPR001005	SANT/Myb domain
Pfam	PF14379	1.6E-24	132	178	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MYHAKKFSTA SLVPHKPQSS EELANVGVVS GGSSVKSPTP SGGSGKQRLR WTSDLHDRFV 60 DAITQLGGPD RATPKGVLRV MGVPGLTIYH VKSHLQKYRL AKYLPESPAD GSKDEKKGSG 120 DSLSCSDSSP GVQINEALRM QMEVQKRLHE QLEVQRQLQM RIEAQGKYLQ KIIEEQEKLG 180 GVLKGSDVLP SAEDKQKSSQ LETAGDASAM PSSPRKKQRV DDGLPDGCTT SNVPPKADQK 240 NEFVGQWDRD LYGSDGGFGF NLQTEFKERD GDAAQKASME LDPLCGSKQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-23	45	103	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-23	45	103	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-23	45	103	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-23	45	103	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-23	45	103	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-23	45	103	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-23	45	103	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-23	45	103	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008240600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008240600.1	0.0	PREDICTED: protein PHR1-LIKE 1-like isoform X1
Refseq	XP_016651870.1	0.0	PREDICTED: protein PHR1-LIKE 1-like isoform X1
Swissprot	Q9SJW0	5e-73	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A314Y658	0.0	A0A314Y658_PRUYE; Myb family transcription factor PHL7 isoform X1
STRING	XP_008240600.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13013	23	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	3e-69	G2-like family protein