PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008240580.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Dof

Protein Properties

Length: 474aa MW: 51550.2 Da PI: 7.5685

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008240580.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.3	3.3e-38	125	184	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k l+cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++r vPvG+grrknk+ XP_008240580.1 125 PDKVLPCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRSVPVGAGRRKNKHL 184 78999*****************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-29	117	182	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.8E-31	126	183	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.491	129	183	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	131	167	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence Send to blast
MYVKAKAISF CGDMSETESR SNKNINDIKL FGRTIPLLQT QIEAITCKNS QVPPKSQFMG 60 SCSELTKAEA DGPCAENSVQ AGTSAICKEE EKSRMQVNEA RVNAKTNSKQ AENRILEQEE 120 DFQKPDKVLP CPRCNSLDTK FCYFNNYNVN QPRHFCKNCQ RYWTAGGTMR SVPVGAGRRK 180 NKHLASQYHQ IIVSADGVPS TRLETTDSIN HQLLSCSKSS STFGLPDRAG TVLKFGHEAP 240 LCESMDTVVN LRDPRTCVEI GSVSGRESGD EPSCVSSVTA CGNQGSELSK NILQRDGIGL 300 QESCSEPNIS HPLNYYPVAP LVFPWNPGWR NAASPVAPQH SQSICVQNCM APNQVQWYPT 360 PVLAVPGPCP QSIPLQTVPA LYWGCMPVCP AGMGNLLLSG SNGCLSPSSS TSNSCCSGNG 420 SPTLGKHSRD SNIMDEEKSE NRVLVPKPLR VDDPDEASKS PIWASLGIKR DLKT

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence Send to blast

MYVKAKAISF CGDMSETESR SNKNINDIKL FGRTIPLLQT QIEAITCKNS QVPPKSQFMG  60
SCSELTKAEA DGPCAENSVQ AGTSAICKEE EKSRMQVNEA RVNAKTNSKQ AENRILEQEE  120
DFQKPDKVLP CPRCNSLDTK FCYFNNYNVN QPRHFCKNCQ RYWTAGGTMR SVPVGAGRRK  180
NKHLASQYHQ IIVSADGVPS TRLETTDSIN HQLLSCSKSS STFGLPDRAG TVLKFGHEAP  240
LCESMDTVVN LRDPRTCVEI GSVSGRESGD EPSCVSSVTA CGNQGSELSK NILQRDGIGL  300
QESCSEPNIS HPLNYYPVAP LVFPWNPGWR NAASPVAPQH SQSICVQNCM APNQVQWYPT  360
PVLAVPGPCP QSIPLQTVPA LYWGCMPVCP AGMGNLLLSG SNGCLSPSSS TSNSCCSGNG  420
SPTLGKHSRD SNIMDEEKSE NRVLVPKPLR VDDPDEASKS PIWASLGIKR DLKT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008240580.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC253543	0.0	AC253543.1 Prunus persica cultivar Lovell clone JGIBIXB-13M5, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008240580.1	0.0	PREDICTED: cyclic dof factor 2-like isoform X1
TrEMBL	A0A251N524	0.0	A0A251N524_PRUPE; Uncharacterized protein
STRING	XP_008240580.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3502	31	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-54	cycling DOF factor 2