PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008240441.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

G2-like

Protein Properties

Length: 438aa MW: 49015.8 Da PI: 7.7218

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008240441.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107	1e-33	65	119	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl XP_008240441.1 65 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 119 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.014	62	122	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-31	63	120	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.5E-17	64	120	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.4E-23	65	120	IPR006447	Myb domain, plants
Pfam	PF00249	5.3E-10	67	118	IPR001005	SANT/Myb domain
Pfam	PF14379	1.4E-24	166	212	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
MMYHHQHHHQ NQHQHQHQHQ HQGKNIHSSS SASSRMSIPP ERHLFLQGDQ NGPGDSGLVL 60 STDAKPRLKW TPDLHERFIE AVNQLGGADK ATPKTVMKLM GIPGLTLYHL KSHLQKYRLS 120 KNLHGHATSG TSKIGTVPVA AERLSEANGT HMSNMSTGPQ ANKGLHISET LQMQIEVQRR 180 LHEQLEVQRH LQLRIEAQGK YLQSVLEKAQ ETLGRQNLGT VGLEAAKVQL SELVSKVSTQ 240 CLNSAFTELK ELQGLCPQQT QTTQPTDCSM DSCLTSCEGS KKDQEIHNSA MGLRANYNGR 300 ELLDEKEPML QKTELKWCEE LKENNMLLSS ISNDAAKRIF PVERRSSDLS MSIGCQGERW 360 NIDSNGNSEE RLKGRSTDGS FLDRTNNRAD SAKAETEKVS RGYRSVPYFA AKLDLNTHDD 420 NDAPSSCKQF DLNGFSWS

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

MMYHHQHHHQ NQHQHQHQHQ HQGKNIHSSS SASSRMSIPP ERHLFLQGDQ NGPGDSGLVL  60
STDAKPRLKW TPDLHERFIE AVNQLGGADK ATPKTVMKLM GIPGLTLYHL KSHLQKYRLS  120
KNLHGHATSG TSKIGTVPVA AERLSEANGT HMSNMSTGPQ ANKGLHISET LQMQIEVQRR  180
LHEQLEVQRH LQLRIEAQGK YLQSVLEKAQ ETLGRQNLGT VGLEAAKVQL SELVSKVSTQ  240
CLNSAFTELK ELQGLCPQQT QTTQPTDCSM DSCLTSCEGS KKDQEIHNSA MGLRANYNGR  300
ELLDEKEPML QKTELKWCEE LKENNMLLSS ISNDAAKRIF PVERRSSDLS MSIGCQGERW  360
NIDSNGNSEE RLKGRSTDGS FLDRTNNRAD SAKAETEKVS RGYRSVPYFA AKLDLNTHDD  420
NDAPSSCKQF DLNGFSWS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-20	64	121	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-20	64	121	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-20	65	121	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-20	65	121	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-20	65	121	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-20	65	121	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-20	64	121	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-20	64	121	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-20	64	121	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-20	64	121	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-20	64	121	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-20	64	121	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00331	DAP	Transfer from AT3G04030	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008240441.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008240441.1	0.0	PREDICTED: uncharacterized protein LOC103338947 isoform X1
Swissprot	Q9SQQ9	1e-155	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A251N488	0.0	A0A251N488_PRUPE; Uncharacterized protein
STRING	XP_008240441.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3852	31	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-146	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]