PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008240402.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

G2-like

Protein Properties

Length: 440aa MW: 48952.9 Da PI: 7.1577

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008240402.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.5	5.2e-32	319	372	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ XP_008240402.1 319 PRMRWTTSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 372 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.15E-15	316	373	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-28	317	373	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.8E-23	319	372	IPR006447	Myb domain, plants
Pfam	PF00249	2.5E-7	320	371	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence Send to blast
MPHEKGISEA AGSCRLSLNP IPDLSLHISP PNANINKNAN SAPSSICTDH GTNEAPNHHE 60 SGSCFDIWRR DMDGDGLINK SHSDSCVRRG SCSLVAASDH DTELSLANPT ASEAESRWRK 120 NYFNTRGGGG EGRRHHLHHH EEEEEAKTSI SHGFSMLDVA ERLKPIKGIP VYNCPPTNCS 180 FPPDLEEQTH YSRVDRDQRD DFDSNKLRLY LSNSLRPAAP AANSCSGMGM GMGFESAMSR 240 TFNGITMDSP SQRQHYFPSY NLNHLQQQQQ QCSVGGVSGG ANYSYNYNSD LPSNGFIMRS 300 RFTPTKLSQN INKRNMRAPR MRWTTSLHAR FVHAVELLGG HERATPKSVL ELMDVKDLTL 360 AHVKSHLQMY RTVKNTDKPL GSSDGSGDED LLSTTTTHHH NSSTLLNQRG ASNLEHDMEH 420 HHHPSSNNLW GNSSRYDLHL

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence Send to blast

MPHEKGISEA AGSCRLSLNP IPDLSLHISP PNANINKNAN SAPSSICTDH GTNEAPNHHE  60
SGSCFDIWRR DMDGDGLINK SHSDSCVRRG SCSLVAASDH DTELSLANPT ASEAESRWRK  120
NYFNTRGGGG EGRRHHLHHH EEEEEAKTSI SHGFSMLDVA ERLKPIKGIP VYNCPPTNCS  180
FPPDLEEQTH YSRVDRDQRD DFDSNKLRLY LSNSLRPAAP AANSCSGMGM GMGFESAMSR  240
TFNGITMDSP SQRQHYFPSY NLNHLQQQQQ QCSVGGVSGG ANYSYNYNSD LPSNGFIMRS  300
RFTPTKLSQN INKRNMRAPR MRWTTSLHAR FVHAVELLGG HERATPKSVL ELMDVKDLTL  360
AHVKSHLQMY RTVKNTDKPL GSSDGSGDED LLSTTTTHHH NSSTLLNQRG ASNLEHDMEH  420
HHHPSSNNLW GNSSRYDLHL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	9e-17	320	374	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-17	320	374	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-17	320	374	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-17	320	374	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008240402.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008240402.1	0.0	PREDICTED: transcription repressor KAN1-like isoform X2
TrEMBL	A0A251PCY0	0.0	A0A251PCY0_PRUPE; Uncharacterized protein
STRING	XP_008240401.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16560.1	2e-38	G2-like family protein