PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008240401.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | G2-like | ||||||||
Protein Properties | Length: 470aa MW: 52192.6 Da PI: 7.2664 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.4 | 5.7e-32 | 319 | 372 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ XP_008240401.1 319 PRMRWTTSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 372 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.33E-15 | 316 | 373 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-28 | 317 | 373 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.1E-23 | 319 | 372 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.7E-7 | 320 | 371 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 470 aa Download sequence Send to blast |
MPHEKGISEA AGSCRLSLNP IPDLSLHISP PNANINKNAN SAPSSICTDH GTNEAPNHHE 60 SGSCFDIWRR DMDGDGLINK SHSDSCVRRG SCSLVAASDH DTELSLANPT ASEAESRWRK 120 NYFNTRGGGG EGRRHHLHHH EEEEEAKTSI SHGFSMLDVA ERLKPIKGIP VYNCPPTNCS 180 FPPDLEEQTH YSRVDRDQRD DFDSNKLRLY LSNSLRPAAP AANSCSGMGM GMGFESAMSR 240 TFNGITMDSP SQRQHYFPSY NLNHLQQQQQ QCSVGGVSGG ANYSYNYNSD LPSNGFIMRS 300 RFTPTKLSQN INKRNMRAPR MRWTTSLHAR FVHAVELLGG HERATPKSVL ELMDVKDLTL 360 AHVKSHLQMY RTVKNTDKPL GSSDGSGDED LLSTTTTHHH NSSTLLNQRG ASNLEHDMEH 420 HHHPSSNNLW GNSSSRGAWL QAGSMDRNGL RPEMVSHHTI TSRNQFEVVS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-16 | 320 | 374 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-16 | 320 | 374 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-16 | 320 | 374 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-16 | 320 | 374 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008240401.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008240401.1 | 0.0 | PREDICTED: probable transcription factor KAN2 isoform X1 | ||||
TrEMBL | A0A251PCY0 | 0.0 | A0A251PCY0_PRUPE; Uncharacterized protein | ||||
STRING | XP_008240401.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1756 | 33 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16560.1 | 4e-38 | G2-like family protein |