PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008240378.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 709aa MW: 78212.9 Da PI: 6.7531 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.6 | 5e-19 | 24 | 79 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++ Le +F+++++p++++r L+++lgL rq+k+WFqNrR+++k XP_008240378.1 24 KKRYHRHTANQIQKLEGMFKECPHPDEKQRLLLSRELGLAPRQIKFWFQNRRTQMK 79 678899***********************************************998 PP | |||||||
2 | START | 178.5 | 4e-56 | 223 | 447 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT-SEEEEEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddke...qWdetlakaetle 83 +a a++el+++ + +ep+W ks+ + +n + + ++f+++++ ++ea+r+sgvv+m+ lve ++d ++ + + + a+t+e XP_008240378.1 223 IAANAMEELLRLLQTNEPLWIKSAtdgrDVLNLESYERIFPRANShlknphLRIEASRDSGVVIMNGLALVEMFMDPNKfgeLFPTIVSMAKTIE 317 67889*********************9999**********99999*********************************77777777777****** PP EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS START 84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171 vissg g lqlm+ elq+lsplv R+f+f+Ry++q ++g w+ivdvS d +++++ + R+++lpSg+li++++ng+skv wvehv+ XP_008240378.1 318 VISSGmlgsqsGSLQLMYKELQVLSPLVQtREFYFLRYCQQIEQGLWAIVDVSYDFPRDNQ-FTNQCRSHRLPSGCLIQDMPNGYSKVSWVEHVE 411 ************************************************************9.7999***************************** PP --SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 172 lkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 +++ p h l+r l++sgla+ga +w+a+lqr ce+ XP_008240378.1 412 IEDKAPtHRLYRDLIHSGLAFGAERWLAALQRMCER 447 **********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.01E-19 | 10 | 81 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-21 | 12 | 83 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.346 | 21 | 81 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.8E-18 | 22 | 85 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.62E-17 | 23 | 82 | No hit | No description |
Pfam | PF00046 | 1.4E-16 | 24 | 79 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 56 | 79 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 50.577 | 213 | 450 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.45E-39 | 214 | 448 | No hit | No description |
CDD | cd08875 | 8.11E-117 | 217 | 446 | No hit | No description |
SMART | SM00234 | 6.0E-46 | 222 | 447 | IPR002913 | START domain |
Pfam | PF01852 | 7.1E-47 | 223 | 447 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 2.3E-8 | 290 | 445 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 9.34E-26 | 469 | 701 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009828 | Biological Process | plant-type cell wall loosening | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 709 aa Download sequence Send to blast |
MEFGSGGGAG SGGDHDASDS QRRKKRYHRH TANQIQKLEG MFKECPHPDE KQRLLLSREL 60 GLAPRQIKFW FQNRRTQMKA QHERADNCAL RAENDKIRCE NIAIREALKN VICPACGVPP 120 LNEDSYFDEH KLRMENAQLK EELDRVSSIA AKCIGRPISQ LPPVQPIHVS SLELSMASFG 180 GHGVGGPSLD LDLLPGTTSS TMPSLPYHPT VLSDMDKSLM TDIAANAMEE LLRLLQTNEP 240 LWIKSATDGR DVLNLESYER IFPRANSHLK NPHLRIEASR DSGVVIMNGL ALVEMFMDPN 300 KFGELFPTIV SMAKTIEVIS SGMLGSQSGS LQLMYKELQV LSPLVQTREF YFLRYCQQIE 360 QGLWAIVDVS YDFPRDNQFT NQCRSHRLPS GCLIQDMPNG YSKVSWVEHV EIEDKAPTHR 420 LYRDLIHSGL AFGAERWLAA LQRMCERFAC LMVSGTSTRD LEGVIPSAEG KRSMMKLAQR 480 MVNNFCASIS TSNGHRWTTL SGMNEVGVRV TIHKSTDPGQ PNGVVLSAAT TIWLPVSPQN 540 VFNFFKDERT RPQWDVLSNN NAVQEVAHIA NGSHPGNCIS VLRAFNTSQN NMLMLQESCI 600 DSSGSLVVYS PVDLPSINIA MSGEDPSYIP LLPSGFTISP DGRPEQGDGA STSSCNVHGS 660 GGSLVTVAFQ ILVSSLPSAK LNLESVNTVN TLIGTTVQQI KAALNCNSS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00232 | DAP | Transfer from AT1G73360 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008240378.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008240378.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG11 | ||||
Swissprot | Q9FX31 | 0.0 | HDG11_ARATH; Homeobox-leucine zipper protein HDG11 | ||||
TrEMBL | A0A251PD52 | 0.0 | A0A251PD52_PRUPE; Uncharacterized protein | ||||
STRING | XP_008240378.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1026 | 33 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |