PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008240277.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ERF | ||||||||
Protein Properties | Length: 365aa MW: 40916.5 Da PI: 4.5129 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.7 | 3.8e-15 | 114 | 159 | 3 | 52 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 ykGVr++k +g+++AeIrdp + r +lg+f taeeAa+a+ + +++ XP_008240277.1 114 YKGVRRRK-WGKYAAEIRDPI----QrCRTWLGTFATAEEAAAAYQKKKLE 159 9****998.**********83....359*****************888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.45E-12 | 112 | 144 | No hit | No description |
SuperFamily | SSF54171 | 1.11E-15 | 112 | 160 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.2E-17 | 113 | 183 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.637 | 113 | 177 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.2E-21 | 113 | 160 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-8 | 114 | 125 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-8 | 114 | 158 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-8 | 136 | 152 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MPGFKTLVLN QHVKLSKLKT KQPNKEENTS SVKRIRIIYN DPDATDSSSD DEEYDGKEDR 60 LLHDKRFVSE ILVVDTKYEP SADVLSHCKT NGGKIGLSMN FYDCKKTKRS SSMYKGVRRR 120 KWGKYAAEIR DPIQRCRTWL GTFATAEEAA AAYQKKKLEF DSIQSLGKTQ RDYQNLQLSD 180 KDKGAFESFQ LTERTKHEFQ GIPLSEESQD SLGDADIETS SAEETKRVFC HPSPSSVLEI 240 SGTASLDIGL KQVKEESSVE VFGGDGSVQP FFEEDLSILK FPEEAMLPLD NEQLDLGCGE 300 NYVFSSLDQF FDGMSDIADT GLSDIVDYPA FNDGNGKAIC LPTLDSDFGQ QDFAWIDQNL 360 NMACP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 114 | 120 | KGVRRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008240277.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT369552 | 0.0 | KT369552.1 Prunus pseudocerasus AP2/EREBP family transcription factor-like protein 20 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008240277.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF118-like | ||||
TrEMBL | A0A0M5KTZ2 | 0.0 | A0A0M5KTZ2_9ROSA; AP2/EREBP family transcription factor-like protein 20 | ||||
STRING | XP_008240277.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13451 | 20 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68550.2 | 2e-25 | ERF family protein |