PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008240255.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 316aa    MW: 35639.1 Da    PI: 6.6537
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008240255.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.47.6e-192269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll+++++++G g+W++ a++ g++Rt+k+c++rw++yl
   XP_008240255.1 22 RGPWTLEEDTLLIQYIARHGEGRWNLLAKRSGLRRTGKSCRLRWLNYL 69
                     89********************************************97 PP
2Myb_DNA-binding53.17.1e-1775118146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ ++eE++l++d++ ++G++ W++Ia++++ gRt++++k++w++
   XP_008240255.1  75 RGNLSPEEQLLILDLHSKWGNR-WSKIAQYLP-GRTDNEIKNYWRT 118
                      7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.2811773IPR017930Myb domain
SuperFamilySSF466894.12E-3120116IPR009057Homeodomain-like
SMARTSM007171.7E-162171IPR001005SANT/Myb domain
PfamPF002491.6E-172269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-232376IPR009057Homeodomain-like
CDDcd001674.39E-132469No hitNo description
PROSITE patternPS0017503746IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profilePS5129420.71274124IPR017930Myb domain
SMARTSM007175.3E-1574122IPR001005SANT/Myb domain
PfamPF002491.6E-1575118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-2377123IPR009057Homeodomain-like
CDDcd001674.63E-1279118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MSSNTKSLSS TSCSEDESEL RRGPWTLEED TLLIQYIARH GEGRWNLLAK RSGLRRTGKS  60
CRLRWLNYLK PDVKRGNLSP EEQLLILDLH SKWGNRWSKI AQYLPGRTDN EIKNYWRTRV  120
QKQARHLKVD TNSTEFQNII RCFWMPRLLQ KIGGESAFSS PMLIQNQMAL QPLDNVSQHL  180
TAATASPPQI PGQGALNMSG TIYNLDSIQK QNAESEFCTS SCILPSEPID MPKMSQFPEC  240
PPSPFHAILN NDNAKGGFCV DNNSYDIEAF NLQGSVTAQG FAGNSAGDCY VAESNWLDSD  300
FSCGMWSMDE LWQSRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-27191231104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008240255.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008240255.10.0PREDICTED: transcription factor MYB108-like
TrEMBLM5WA270.0M5WA27_PRUPE; Uncharacterized protein
STRINGXP_008240255.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.11e-80myb domain protein 116