PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008240084.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | SBP | ||||||||
Protein Properties | Length: 551aa MW: 60257.9 Da PI: 7.317 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 132.5 | 1.4e-41 | 177 | 252 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv gC++dls+ k+yh+rhkvCe+hsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q XP_008240084.1 177 CQVYGCDKDLSSSKDYHKRHKVCEAHSKTAKVIVNGREQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQ 252 **************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 9.2E-34 | 172 | 238 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.359 | 174 | 251 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.96E-38 | 175 | 255 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 8.1E-32 | 177 | 250 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 551 aa Download sequence Send to blast |
MESWSRISEG KGFVSDETIS HTDSFSRSRN TLMGWELKIP CAFGSNVLVS GQQAIESQGF 60 GELGFPEMMG KHFSNNPIRD VLSGKVYGER STNTTSMATP NLFSGEDESS SKLSSSIVDS 120 NSRDSSLIDL KLGRLADNRD FHDSKFSKGH PILSSSESST PAKRMRVSGL YSQTAYCQVY 180 GCDKDLSSSK DYHKRHKVCE AHSKTAKVIV NGREQRFCQQ CSRFHLLAEF DDGKRSCRKR 240 LAGHNERRRK PQVGIHSGRA GSRFQDNMLT TASFICQEIL PSGILDAENY GTNDWCRHIK 300 VEDATHYRPL SGVPVTNGHL PLKPAFPSYD IGKRYPPFHD NGTNPLTGNI IIENGSQYSH 360 DMRGLNSGSH SMFHETTTLG SEDFNVFNTA STVHGLSGIS DSGCALSLLS SQSQKSSSHL 420 SGIPMARPLV MPVSHTNYRL VQGSENLIGG CSHASSSGVS NRFPSSGMNS GAGTHLGPIL 480 LSNGSDTDDF GISDGIFQGS DFVNAKDRLS CEDGTTIDLL QLSSQLQRVE DQRQSMQVKQ 540 ESDAFCCLRI T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-27 | 177 | 250 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008240084.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681932 | 3e-41 | LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001. | |||
GenBank | LN713266 | 3e-41 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008240083.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 18 | ||||
Refseq | XP_008240084.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 18 | ||||
Refseq | XP_016651143.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 18 | ||||
TrEMBL | A0A251PBG8 | 0.0 | A0A251PBG8_PRUPE; Uncharacterized protein | ||||
STRING | XP_008240083.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 2e-48 | SBP family protein |