PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008239933.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | Dof | ||||||||
Protein Properties | Length: 466aa MW: 50887.5 Da PI: 5.1606 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.3 | 9.4e-40 | 125 | 185 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrknk+s XP_008239933.1 125 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKNSA 185 7899******************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-30 | 122 | 182 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.5E-32 | 127 | 183 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.863 | 129 | 183 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 131 | 167 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 466 aa Download sequence Send to blast |
MLETKDPAIK LFGKKIPLPA DIEDLGFTQP EEKEVDVESE EEDEEDEEEE EAETEQDPPS 60 RKSPESRDQD DGPPNTEDPT NMGILPDSNV NPMPLSMDEE SPKSNTSKTE NTETTNSQEK 120 TLKKPDKILP CPRCNSMDTK FCYYNNYNVN QPRHFCKACQ RYWTAGGTMR NVPVGAGRRK 180 NKNSASHYRH ITISEALQAA QIDAPNGAHH PALKSNGRVL SFGVDAPICD SMASVLNLAD 240 KKVLNGTQNG FHKSEERVIP TPCKGRENGD DSSRASSATV SKPQLQNVNG FSSQIPCLPG 300 VPWPYPWNSA VPPPAFCPPG FPLSFCPAPY WNCGVPGTWN VPWFGPQPAS PNQKSPSSGS 360 NSPTLGKHSR DGDILKPESL EKEEPSKQKS GRVLVPKTLR IDDPSEAAKS SIWATLGIKN 420 DSISGGGLFK AFQSKSDQKN IVSETSPALR ANPAALSRSL NFQESS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269|PubMed:19619493}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00394 | DAP | Transfer from AT3G47500 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008239933.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269|PubMed:19619493}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008239933.1 | 0.0 | PREDICTED: cyclic dof factor 3 | ||||
Swissprot | Q8LFV3 | 1e-118 | CDF3_ARATH; Cyclic dof factor 3 | ||||
TrEMBL | M5WM18 | 0.0 | M5WM18_PRUPE; Uncharacterized protein | ||||
STRING | XP_008239933.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF625 | 34 | 147 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47500.1 | 1e-105 | cycling DOF factor 3 |
Publications ? help Back to Top | |||
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