PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008239828.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 683aa    MW: 73520.6 Da    PI: 6.9132
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008239828.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.12.4e-30287346159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+aed +++++tYeg+Hnh+
  XP_008239828.1 287 MNDGCQWRKYGQKIAKGNPCPRAYYRCTIApSCPVRKQVQRCAEDMSILITTYEGTHNHP 346
                     58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.7E-32272348IPR003657WRKY domain
SuperFamilySSF1182902.62E-27280348IPR003657WRKY domain
PROSITE profilePS5081128.346282348IPR003657WRKY domain
SMARTSM007742.4E-36287347IPR003657WRKY domain
PfamPF031061.1E-26288346IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MEAALGKSNS HEGSEKEEKR LVLESSSLAD HDDQEAAGSE EDTLLKVGNG GSCQENNEMK  60
SSSPTQKDLS SSKQISTTSN MKVEPDHSMA STSSSRKEQD YQLESARAEM GEVREENQRL  120
KKYLDRITDE YQTLQMQLYD IQEKANKSKD VTIASTNNIY NHQYEESEMV SLSLGSFSSR  180
AKKDEKNKNR STSSQGKENE SDRESLSLGL DCKYEAPKSS AATTEVPLSN SSPASSLEEV  240
PKEEAGETWP PKKVLKTARS VEDEVAQQNP VKKARVSVRA RCDTPTMNDG CQWRKYGQKI  300
AKGNPCPRAY YRCTIAPSCP VRKQVQRCAE DMSILITTYE GTHNHPLPMS ATAMASTTSA  360
AASMLLSGSS SSARSGLNPS VGATTTAAHD LHGYNFYLSD NSKSRFFIPN SSLSSSLPTI  420
TLDLTSNPPP PSSSSNPLSH FNKFSSSSNS SHQLHPPTSL NFGSNSESNT NMSWSNGFLS  480
YGAQLPPYNS NNKNQIGSLS SLGIRQQQQP LQNNIYQNYM HKNNLNPTPP PHPSQGATPH  540
QFQPDPIAAA TKAITADPSF QSALAAALSS IIGSNSNVGT AGTTGMLGNN NNQAGGGDNN  600
NMAQKFNWGD QFAGSTTTSS SPYLQTQIGN NSTIGCASSY LNKTTSANSQ PGSLMFLPPS  660
LPFASAPKSA STSPGDTRDH KSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-20274348174WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008239828.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008239828.10.0PREDICTED: probable WRKY transcription factor 61
TrEMBLA0A251PAI10.0A0A251PAI1_PRUPE; Uncharacterized protein
STRINGXP_008239828.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.17e-65WRKY DNA-binding protein 72