PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008239785.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

MYB_related

Protein Properties

Length: 321aa MW: 35639.9 Da PI: 10.4598

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008239785.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.7	3e-14	111	155	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky XP_008239785.1 111 PWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 155 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.997	104	160	IPR017930	Myb domain
SuperFamily	SSF46689	6.43E-17	106	160	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.8E-17	107	158	IPR006447	Myb domain, plants
SMART	SM00717	1.8E-10	108	158	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.2E-11	110	155	IPR009057	Homeodomain-like
CDD	cd00167	1.99E-9	111	156	No hit	No description
Pfam	PF00249	1.9E-11	111	155	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MDFEIRSAGV EQKFFMKRGQ EDKSARPSRK KQRLKNVVVV AVVGEDGWHV LHRRACGRRR 60 SQYEQPQEGS NNNSGNNTIA GKDDVAGYAS ENDVVHNSAG NRERERKRGV PWTEEEHKLF 120 LLGLQKVGKG DWRGISRNFV KTRTPTQVAS HAQKYFLRRS NHNRRRRRSS LFDITTDTVT 180 TTPMDEEQVH HQNNTSQSHP LPPPPPSEAC NPSGFSMVPN FPLTVGPAVL PVPIENPMGN 240 LTLGQANLEN NASAKLVRPI ALHSAPHATA MSDLNLKSTM DTSTLTLNLS LSMDPRESSS 300 RHSAFQAMTS FSNGDSIISV A

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00631	PBM	Transfer from PK23829.1	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008239785.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008239785.1	0.0	PREDICTED: transcription factor MYB1R1-like
Swissprot	Q2V9B0	2e-56	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A314XZY8	1e-162	A0A314XZY8_PRUYE; Transcription factor MYB1R1
STRING	XP_008239785.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4248	31	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74840.1	3e-39	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]