PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008239620.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 529aa    MW: 58601.8 Da    PI: 6.3077
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008239620.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS371.41.2e-1131575281374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal..ppsetseknsseelaalklfsevsPilkf 93 
                     lv+lL++cAeav+ +d++ a+alL++l+ +a   g+++qR+a++f+++La+rla  ++  +  +  +p ++++   +++  al+l +e++P ++f
  XP_008239620.1 157 LVQLLIACAEAVACRDKSHASALLSELRANALVFGSSFQRVASCFVQGLANRLALVQPLGAVGFigSPVNAKDFALDKKEEALRLVYEICPHIQF 251
                     689**************************************************995543333331355555555599999*************** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                     +h++aN+ Ilea+ege+ vH++D++++    +G QW  L+++La+R+++pp +lRiTgvg       ++l+ +g+ L+ +A++lg+++ef+v v+
  XP_008239620.1 252 GHFVANSSILEAFEGESFVHVVDLGMTlglpHGDQWRGLIESLATRAGQPPsRLRITGVGL----YGDRLQIIGDELEAYADRLGINLEFSV-VE 341
                     ***********************99873333667*************888879********....9*************************9.7* PP

            GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                     ++le+l++e++++  gE+l+Vn++lqlh +++es    +   +vL++v +lsPk++v+veq+++hn++ Fl rf+eal+yysa+fdsl+a lp+ 
  XP_008239620.1 342 SNLENLRPEDIKLLDGEVLVVNSILQLHCVVKESRGALN---SVLQMVHELSPKILVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKY 433
                     *******************************88877777...8**************************************************** PP

            GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSa 372
                     +  r+k+E++++++ei+n+++ceg +r+erhe++ +Wr+r+++aGF+++p++  +  +ak  l k+k  +gy++ ee+g+lvlgWk++p+v++S+
  XP_008239620.1 434 DTRRAKMEQFYFAEEIKNIISCEGPARVERHERVDQWRRRMSRAGFQAAPIK--MLVNAKQWLGKIKvCEGYTILEEKGCLVLGWKSKPIVAASC 526
                     **************************************************97..5678999******99************************** PP

            GRAS 373 Wr 374
                     W+
  XP_008239620.1 527 WK 528
                     *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.629131509IPR005202Transcription factor GRAS
PfamPF035144.0E-111157528IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MAPSRNFMPE EYTINHERTN KMSSFDLISH SAMSCYSNPY MPLLEEGNAS ALTLPYSDES  60
GDHKRLKRTI SIAESMSSHN SLYSGGSNNS CVTNGSISRS SSTNSLNTLP RLHFRDHIWT  120
YTQRYLAAEA VEEAAAAMTN AEGNGAEEDG TADGMRLVQL LIACAEAVAC RDKSHASALL  180
SELRANALVF GSSFQRVASC FVQGLANRLA LVQPLGAVGF IGSPVNAKDF ALDKKEEALR  240
LVYEICPHIQ FGHFVANSSI LEAFEGESFV HVVDLGMTLG LPHGDQWRGL IESLATRAGQ  300
PPSRLRITGV GLYGDRLQII GDELEAYADR LGINLEFSVV ESNLENLRPE DIKLLDGEVL  360
VVNSILQLHC VVKESRGALN SVLQMVHELS PKILVLVEQD SSHNGPFFLG RFMEALHYYS  420
AIFDSLDAML PKYDTRRAKM EQFYFAEEIK NIISCEGPAR VERHERVDQW RRRMSRAGFQ  480
AAPIKMLVNA KQWLGKIKVC EGYTILEEKG CLVLGWKSKP IVAASCWKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-6216452726378Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008239620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008239620.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLA0A314UKR80.0A0A314UKR8_PRUYE; DELLA protein RGL1-like
STRINGXP_008239620.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87302945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.14e-80RGA-like 1