PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008239568.2
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family LFY
Protein Properties Length: 396aa    MW: 43865 Da    PI: 7.8847
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008239568.2genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY602.31e-18313801386
         FLO_LFY   1 mdpeafsaslfkwdpraaaaapparlleeaavseap..leaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmksl 93 
                     mdp+afsas+fkwd r ++++p+ r++ eaav++++  ++ aa+   r+l +le+lf+ayGvry+t+akiaelGftv+tL+dm+d eldd+m+sl
  XP_008239568.2   1 MDPDAFSASFFKWDLRGMVVPPS-RAQLEAAVTPQAaaAAYAAVRPPRELGGLEDLFQAYGVRYYTAAKIAELGFTVNTLLDMRDGELDDMMSSL 94 
                     9**************99887766.454555444444123333444455578******************************************** PP

         FLO_LFY  94 seifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqeekeaagsggeglgeaelvaaeekkseeekkka 188
                     s+ifr+dllvGeryGikaavraerr  ++                 aldalsqeglseepvq+eke++gsgg+   ++e+vaa+ +k++++++++
  XP_008239568.2  95 SQIFRWDLLVGERYGIKAAVRAERRPPRA--------------AGXALDALSQEGLSEEPVQQEKEMVGSGGGA--AWEVVAAAGEKRKKQRRTR 173
                     ************************95443..............3569***********************9998..8999888754333332222 PP

         FLO_LFY 189 skkkqkrkkkkelkse..........ededeeeeededeegsgedge....erqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqki 269
                        k + ++ + +             ++ed+++ +d +++g+g++ +    erqrehPfivtepgevargkknGLDYLf+LyeqCr+fL+qvq+i
  XP_008239568.2 174 ---KGQYRNFNGIG-GghnndhnegvDNEDDNDMDDMNGHGNGAG-RgllsERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCRDFLIQVQNI 263
                     ...22222222222.123444554443333344444444444433.13577******************************************** PP

         FLO_LFY 270 akerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahpr 364
                     ak+rGekcPtkvtnqvfr+akkagasyinkPkmrhYvhCYalhcLdeeasnalrr fkergenvGawrqacykplvaiaa qgwdida+fn+hpr
  XP_008239568.2 264 AKDRGEKCPTKVTNQVFRFAKKAGASYINKPKMRHYVHCYALHCLDEEASNALRRVFKERGENVGAWRQACYKPLVAIAAGQGWDIDAIFNSHPR 358
                     *********************************************************************************************** PP

         FLO_LFY 365 LsiWYvPtkLrqLChlerskas 386
                     LsiWYvPtkLrqLCh+er++a+
  XP_008239568.2 359 LSIWYVPTKLRQLCHTERNNAT 380
                     *******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016983.4E-1891379IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MDPDAFSASF FKWDLRGMVV PPSRAQLEAA VTPQAAAAAY AAVRPPRELG GLEDLFQAYG  60
VRYYTAAKIA ELGFTVNTLL DMRDGELDDM MSSLSQIFRW DLLVGERYGI KAAVRAERRP  120
PRAAGXALDA LSQEGLSEEP VQQEKEMVGS GGGAAWEVVA AAGEKRKKQR RTRKGQYRNF  180
NGIGGGHNND HNEGVDNEDD NDMDDMNGHG NGAGRGLLSE RQREHPFIVT EPGEVARGKK  240
NGLDYLFHLY EQCRDFLIQV QNIAKDRGEK CPTKVTNQVF RFAKKAGASY INKPKMRHYV  300
HCYALHCLDE EASNALRRVF KERGENVGAW RQACYKPLVA IAAGQGWDID AIFNSHPRLS  360
IWYVPTKLRQ LCHTERNNAT ASSSASGGGG GDHLPY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A1e-1112173961194PROTEIN LEAFY
2vy2_A1e-1112173961194PROTEIN LEAFY
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay regulate indeterminacy during leaf and flower development.
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor that act to specify determinacy in the progenitor cells for both flowers and leaves.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008239568.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8038480.0KT803848.1 Prunus mume leafy protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008239568.20.0PREDICTED: LOW QUALITY PROTEIN: floricaula/leafy homolog
SwissprotO040640.0FLLH_POPTR; Floricaula/leafy homolog
SwissprotO485590.0UNI_PEA; Protein UNIFOLIATA
SwissprotQ405050.0FL2_TOBAC; Floricaula/leafy homolog 2
TrEMBLA0A140FAH50.0A0A140FAH5_PRUMU; Leafy protein
STRINGXP_008239568.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80333346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-110floral meristem identity control protein LEAFY (LFY)
Publications ? help Back to Top
  1. Tuskan GA, et al.
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
    Science, 2006. 313(5793): p. 1596-604
    [PMID:16973872]