PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008239496.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family SBP
Protein Properties Length: 403aa    MW: 44262.2 Da    PI: 8.243
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008239496.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.82.3e-4194170278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     C v+gC++dls +++yhrrhkvCe hsk+p+v+++g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+
  XP_008239496.1  94 CLVDGCNSDLSVCRDYHRRHKVCELHSKTPQVTINGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 170
                     **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.4E-3387155IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.79591168IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.09E-3892173IPR004333Transcription factor, SBP-box
PfamPF031108.7E-3194167IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MDWNLKAPSW DLTELEQETF SNLGTVDGSS SFGDHRTIKG NFSVDLKLGR LGDSGNNELV  60
DMLKEAGGPK TTSSPSGPSK RSRAAYSGSQ TVSCLVDGCN SDLSVCRDYH RRHKVCELHS  120
KTPQVTINGQ KQRFCQQCSR FHSLEEFDEG KRSCRKRLDG HNRRRRKPQP EPLSRSGSYL  180
SSYQGTQLLP FSSSLVYPST TVVNPTWAGV VKAEADTGLH NQHLQLPLID KQNMFLGSST  240
STSSTYKGGK QFSLFQSSPL HNQTSHHGAS VCQPLLNTIS FSETGGGAKS KMFCDRLTTQ  300
IHDSDCALSL LSSPQTQQTS EIGLRHMVQQ PNSISLMQQR LGPGSLHGNN SIEPMDSVLV  360
SNGSEANVHC PGMFHIGSDG SLGNNQQHQH QHQAPQTLPF HWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-28941671184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150167KRSCRKRLDGHNRRRRKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008239496.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008239496.10.0PREDICTED: squamosa promoter-binding-like protein 13A
TrEMBLM5WUE70.0M5WUE7_PRUPE; Uncharacterized protein
STRINGXP_008239496.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25913378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-75SBP family protein