PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008239449.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 903aa    MW: 99678.3 Da    PI: 8.6644
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008239449.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.17.4e-21811891186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+ +ev +Li++r ++ +r++  k +++lWee+s+++ + g++rsp qCk+ w +l ++y++ k g++++     +++pyf++++
  XP_008239449.1 811 KWKPEEVEKLIKMRGKLRSRFQVVKGRMALWEEISRNLLADGINRSPGQCKSLWASLVQKYEESKSGKRSQ-----KSWPYFEEMD 891
                     7******************************************************************9984.....56*******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.60.15.101.8E-67101351IPR001279Metallo-beta-lactamase
SuperFamilySSF562818.58E-72102516IPR001279Metallo-beta-lactamase
SMARTSM008491.8E-25114311IPR001279Metallo-beta-lactamase
PfamPF127061.6E-10126261IPR001279Metallo-beta-lactamase
PfamPF075211.6E-5457488IPR011108Zn-dependent metallo-hydrolase, RNA specificity domain
PROSITE profilePS500908.502804868IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.3E-6805870IPR009057Homeodomain-like
SMARTSM007170.0012808870IPR001005SANT/Myb domain
PfamPF138372.0E-18809891No hitNo description
CDDcd122033.10E-20810875No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009942Biological Processlongitudinal axis specification
GO:0060918Biological Processauxin transport
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 903 aa     Download sequence    Send to blast
MLLGVLGGLS VHHSLCSAPF RPSVSTQMAA FGALSPCPYS LLWRPKPTNR CVSCSVGSSA  60
VTGTRGSNVK RSGRMEGPRK SMEDSVQRKM EQFYEGREGP PIRVLPIGGL GEIGMNCMLV  120
GNYDRYILID AGVMFPDFDE LGVQKIIPDT TFIKKWSHKI EAIVITHGHE DHIGALPWVI  180
PALDPGTPIF ASSFTMELIK KRLKEHGIFV PSRLKTFRTK RKFMAGPFEI EPVRVTHSIP  240
DCCGLVLRCS DGTILHTGDW KIDESPLDGR GFDREALEEL SKEGVTLMMS DSTNVLSPGR  300
TTSETSVADA LLRHISAAKG RVITTQFASN IHRLGSVKAA ADFTGRKLVF VGMSLRTYLD  360
AAWKDGKAPI DPSSLVKVED IDSYAPKDLL IVTTGSQAEP RAALNLASFG SSHSVKLTKE  420
DIILYSAKVI PGNESRVMKM LNRISEIGST IVMGKNEGLH TSGHGYRGEL EEVLQIVKPQ  480
HFLPIHGELL FLKEHELLGR STGIRHTTVI KNGEMLGVSH LRNRRVLSNG FTLLGKENLQ  540
LKFSDGDKAF GTSSELCVDE RLRVALDGII VVSMEILRPQ NVNGLTENSI KGKIKITTRC  600
LWVDKGKLID ALHKAAHAAL SSCPINCPLP HMERTVSEVL RKLVRKYSGK RPDVIAIAME  660
NPAAVLADEV SVRLSGKSHV GSEMSTLRKV IDRHPYKNQS TRTQADEGKD NAHLQSTSQQ  720
DTEESVLEDD GIEVEVLLPE EDSATSNSKS EKLSSDSEKS DDFWNAIVRL STVDKSVVDK  780
NGLAVQQEHL KKDGPDSSEI PNPSKPVKRN KWKPEEVEKL IKMRGKLRSR FQVVKGRMAL  840
WEEISRNLLA DGINRSPGQC KSLWASLVQK YEESKSGKRS QKSWPYFEEM DGALSDSEEM  900
ATK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5a0t_A9e-8910266019560RIBONUCLEASE J
5a0t_B9e-8910266019560RIBONUCLEASE J
5a0v_A9e-8910266019560RIBONUCLEASE J
5a0v_B9e-8910266019560RIBONUCLEASE J
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008239449.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:25871650}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008239449.10.0PREDICTED: ribonuclease J isoform X2
SwissprotQ84W560.0RNJ_ARATH; Ribonuclease J
TrEMBLA0A251P8U00.0A0A251P8U0_PRUPE; Uncharacterized protein
STRINGXP_008239449.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63420.10.0Trihelix family protein
Publications ? help Back to Top
  1. Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D
    Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.
    Plant Physiol., 2011. 155(4): p. 1678-89
    [PMID:21139083]
  2. Halpert M,Liveanu V,Glaser F,Schuster G
    The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities.
    Plant Mol. Biol., 2019. 99(1-2): p. 17-29
    [PMID:30511330]