PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008239400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | C3H | ||||||||
Protein Properties | Length: 550aa MW: 60476.4 Da PI: 4.832 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.3 | 1.7e-10 | 309 | 331 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C+++++tGtCk+ ++CkF+H+ XP_008239400.1 309 PDCSYYLKTGTCKFRSNCKFNHP 331 78********************8 PP | |||||||
2 | zf-CCCH | 30.4 | 6.8e-10 | 378 | 403 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C++++r+ C yG +C+F+H+ XP_008239400.1 378 PGERDCPYYMRNLSCGYGLSCRFNHP 403 5789*********************9 PP | |||||||
3 | zf-CCCH | 25.7 | 2e-08 | 477 | 503 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +f++tG Ck+ ++Ck++H++ XP_008239400.1 477 PGQPVCIYFSATGDCKFKSNCKYHHPK 503 5789*********************96 PP | |||||||
4 | zf-CCCH | 20.7 | 7.6e-07 | 524 | 548 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C ++ +G+C+ G+ C+F H+ XP_008239400.1 524 GQNICTQYSTYGICHSGPACQFDHP 548 6789********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.882 | 305 | 333 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-4 | 305 | 332 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.53E-5 | 307 | 333 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-6 | 309 | 331 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0067 | 377 | 404 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.737 | 377 | 405 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-6 | 379 | 403 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.6E-5 | 476 | 503 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.826 | 476 | 504 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.3E-6 | 478 | 503 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-5 | 479 | 506 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-6 | 520 | 547 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.638 | 522 | 550 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.038 | 522 | 549 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 1.4 | 533 | 548 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 550 aa Download sequence Send to blast |
MLPAAAVAVR LLLPVSVSVY VLYKYWRSGR QTESWVPPSR GNNDDVPQNS GDNGVVPPNS 60 VVRPKSGEND VVPSDGDLAI VEEILKNDHV FLNKIRTLDP AVLDKLLKID PVALDALLRI 120 DPAVLRDSAE LNPAIIDAIC ELSEKEEGDE EADWSCSRPV TESSLVIGVP SNSGNNDVVP 180 PNSGNNDVVP CPELSDRDLA ILEEILKDDP VLLSEIRTHD PAVINELRKF DPAVLREMVL 240 DSAEVDPTII DAIRKLCLKR KEEDEQEAKG SCSGRETESE NENGNETQSQ ERDEEISRSR 300 HYPLRPEAPD CSYYLKTGTC KFRSNCKFNH PHTTTKNNQD YFWSGGRKDG RDGSFNPRSR 360 EPSAAPFVEN FMGLPIRPGE RDCPYYMRNL SCGYGLSCRF NHPDPTPAGE SDPPSGYGNG 420 GPASLQGASS STAARWSAPR SLNNAPLIIP PSQGIPSRNT EHNGYQQQQV EELPLRPGQP 480 VCIYFSATGD CKFKSNCKYH HPKNQTAMSP SCALNDKGLP LRPGQNICTQ YSTYGICHSG 540 PACQFDHPSL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008239400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008239400.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 43-like isoform X2 | ||||
TrEMBL | A0A251P940 | 0.0 | A0A251P940_PRUPE; Uncharacterized protein | ||||
STRING | XP_008239400.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 3e-77 | C3H family protein |