PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008239395.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 897aa    MW: 99568.5 Da    PI: 7.6454
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008239395.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.61.6e-06824850127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++ C +f+r G Ck+ ++Ck++H++
  XP_008239395.1 824 PGQPVCLYFSRAGDCKHKSNCKYHHPK 850
                     57899********************96 PP
2zf-CCCH22.52e-07871895226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++ +C  ++++G+C+ G+ CkF+H+
  XP_008239395.1 871 GQNICTQYSAYGICNSGPACKFNHP 895
                     6789********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.31691719IPR000571Zinc finger, CCCH-type
SMARTSM003561.9691718IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-4823850IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.61823851IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6867894IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-4869896IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.005869897IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-5871895IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 897 aa     Download sequence    Send to blast
MLTAPIGLPN PDVPPNAELS DLDLAILEEI RKLDALLYKI RELDPALLDK IRKFDPDVLD  60
ELRKIDPALL DGLRKIHPTL LDELRKVDPA VLQQMQLEPA EWDPAIIGAI RKLYLKLREE  120
DEVVAERNTC SGPQTAKENE NGNQKTQSEE TEGGGGGENK NDNGREVMKI GEERSRSQHY  180
PVRPEAGEGK TGRKNRKNRK NNQNYFRSGG QRPNFYASQN PDNDDVLSPN PGKVDMVLQV  240
DPAELDPAII DAICKLSLKE KEKGEQEVEV SCSRPETEIR NKNGNKRQSE DRDGGGGGEN  300
KNENGGQVEK KVDDERSRRH HYPVRPPGAG DSSHNLKTGT HKFGSNCKFN RTCRSKNNQV  360
SKDKMKEREG LAEKPGQTEC KNYFRSGGQR QNRYAPPNPG NDGVLPPNPG IDDVLPPNHG  420
DTDCDLATLR EILRHKTALL GIIRKLDAGL FGGIKKIDLT VLREMQADPA EWDPAIIDAI  480
CKLSLEEKDE SEEEVEVSCG GPETEIINEN RYKTQSEERN GGGGENKNEN GGEVQKNVDE  540
ERSRRHHYPV RPPGAGDCSH NLKTGTHQFG SNCKFNLTRR SKNNQLKVSK NKMKEREGLA  600
EKPGKTECKV SKNKMKEREG LAEKPGKTEC KVSKNKMKER EGLAEKPGKT EFKNYFRSGG  660
HKSGNACALN PRRGEASVAP ILENFMGLPI RPGEKDCPCY MRTLSCMYGM KCRFNHPDPT  720
PAGESDPPSG NGNGGPASLQ GASSATAARW YAPISLNNAP LYEPIMIPPS QEFPSQNTEW  780
NGYQAPESSM PAPPPYVMNH SVTETNTYEQ YPQQKQVQEF PERPGQPVCL YFSRAGDCKH  840
KSNCKYHHPK NQTAVPPSCA LSDKGLPLRP GQNICTQYSA YGICNSGPAC KFNHPSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192198RKNRKNR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008239395.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008239395.10.0PREDICTED: uncharacterized protein LOC103338000
TrEMBLA0A251PCM70.0A0A251PCM7_PRUPE; Uncharacterized protein
STRINGXP_008239395.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3988922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.13e-77C3H family protein