PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008239201.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Dof

Protein Properties

Length: 316aa MW: 34499.1 Da PI: 8.9882

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008239201.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.2	1e-39	43	104	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ke+al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk+sss XP_008239201.1 43 KEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSS 104 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-25	35	91	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.7E-33	45	101	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.134	47	101	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	49	85	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MDTAQWPQGI VVKPIEEIVT NACPKPAAAA AVNNLERKAR PQKEQALNCP RCNSTNTKFC 60 YYNNYSLTQP RYFCKTCRRY WTEGGSLRNI PVGGGSRKNK RSSSSSAVAN SSTTTSSTSS 120 ASKRLPDLIQ PQNPKINQGQ DLNLTFPATN QDFRNIISDH LVHHHQQHHQ LPNNNNNMEN 180 SNKQNHINIS ASSPSSTTTT TTSHLSALEL LTGLTSRGLN SFMPMPVPDP NNNNNTVYST 240 TSGFPMQDFK PTLNFSLDGL GSGYGSLQGV QESSGRLLFP FEDLKQVSST GGGIEQNKEH 300 GDSTGYWTGM LGGGSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008239201.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT202286	0.0	KT202286.1 Prunus dulcis dof zinc finger protein (dof) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008239201.1	0.0	PREDICTED: dof zinc finger protein DOF4.6
Swissprot	Q8LAP8	3e-67	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	A0A0P0CRB4	1e-180	A0A0P0CRB4_PRUDU; Dof zinc finger protein
STRING	XP_008239201.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	2e-45	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]