PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008239167.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Nin-like

Protein Properties

Length: 991aa MW: 109139 Da PI: 5.1886

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008239167.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.8	5.2e-29	591	642	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCR++GI+RWP+Rkik++ XP_008239167.1 591 AEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRHHGISRWPSRKIKKV 642 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.587	581	662	IPR003035	RWP-RK domain
Pfam	PF02042	1.4E-25	595	642	IPR003035	RWP-RK domain
SuperFamily	SSF54277	7.2E-22	893	983	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.9E-24	898	979	No hit	No description
PROSITE profile	PS51745	24.546	898	980	IPR000270	PB1 domain
SMART	SM00666	2.5E-26	898	980	IPR000270	PB1 domain
CDD	cd06407	1.19E-35	899	979	No hit	No description
Pfam	PF00564	2.8E-21	899	979	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 991 aa Download sequence Send to blast
MVELEEESQT QAIPPKSKNI VDDREAALME FDLDLDAFWP LDPIHFPSNP TSPPLFSSTD 60 QPCSPLWVFP DGDADNDDKL SGQVDQALSD RPQFSSCIPD PGREIPRENE DRRMLTSPFL 120 GLEPFENPDA YCLIKEKITQ ALRQLKELTD QHVLAQVWAP VKNGGRYVLT TSGQPFVLDP 180 HTNGLHQYRM ASLMYMFSVD GESDGMLGLP GRVFQQKLPE WTPNVQYYSI KEYPRLGHAQ 240 HYNVQGTLAL PVFEPSGQTC VGVLELIMTS PKINYASEVD KVCKALEAVS LKSSEIKDHT 300 SMQIQICNEG RQTALTEILE ILTVVCETHK LPLAQTWVPC MHRNVLAYGG GLKKSCTSFD 360 GSCMEQVCMS TTDAAFYIVD APMWHFRDAC VEHHLQKGQG VAGRAFLSRN ACFCRDITQF 420 CKTDYPLVHY ARMFKLTSCF AICLQSTRTG NDDYILEFFL PPSITDSYEQ QTLLGSLLAI 480 IKNHFQSLKV ASGIILEEEG LVEMVQASTN KGLDSRLECI RIPCSAETPP GPAIPNGEEM 540 VQLDSSRPQL MVDFDPANDG NNAVNEGGEN NISCLENKDI KKKSEKKRGK AEKSISLEVL 600 QQYFAGSLKD AAKSLGVCPT TMKRICRHHG ISRWPSRKIK KVNHSLSKLQ RVIESVQGAE 660 GAFGLTSLTA SPRSGAVGSI SRPYILNGSN QQSSPSSKPS ELHGEKKDSP TPTTPGKEGQ 720 AWIENQLLDG GILSQKELLL EHGRFLLDDG KGSNTSKTGS SSREASAGTP TSHGSCQGSP 780 ANGNALVNNP FVPSIHDQCI EVNGFPESAV RPPKEPNLSV ACSIPDAVLM TDPEEPCRGM 840 LIEDAGSSKD LKNLCPQVDA MVDEQVPEAC RTNPPCSDSA LKPSNTMPHI IARQEMKSVT 900 IKATYKEDII RFRISMSSGI VELKDEVAKR LKLEMGTFDI KYVDDDLEWV LVACDADLQE 960 CMEICRSLGI KMIRLSVHDI MSNFGSSCGS M

Sequence ? help Back to Top

Protein Sequence Length: 991 aa Download sequence Send to blast

MVELEEESQT QAIPPKSKNI VDDREAALME FDLDLDAFWP LDPIHFPSNP TSPPLFSSTD  60
QPCSPLWVFP DGDADNDDKL SGQVDQALSD RPQFSSCIPD PGREIPRENE DRRMLTSPFL  120
GLEPFENPDA YCLIKEKITQ ALRQLKELTD QHVLAQVWAP VKNGGRYVLT TSGQPFVLDP  180
HTNGLHQYRM ASLMYMFSVD GESDGMLGLP GRVFQQKLPE WTPNVQYYSI KEYPRLGHAQ  240
HYNVQGTLAL PVFEPSGQTC VGVLELIMTS PKINYASEVD KVCKALEAVS LKSSEIKDHT  300
SMQIQICNEG RQTALTEILE ILTVVCETHK LPLAQTWVPC MHRNVLAYGG GLKKSCTSFD  360
GSCMEQVCMS TTDAAFYIVD APMWHFRDAC VEHHLQKGQG VAGRAFLSRN ACFCRDITQF  420
CKTDYPLVHY ARMFKLTSCF AICLQSTRTG NDDYILEFFL PPSITDSYEQ QTLLGSLLAI  480
IKNHFQSLKV ASGIILEEEG LVEMVQASTN KGLDSRLECI RIPCSAETPP GPAIPNGEEM  540
VQLDSSRPQL MVDFDPANDG NNAVNEGGEN NISCLENKDI KKKSEKKRGK AEKSISLEVL  600
QQYFAGSLKD AAKSLGVCPT TMKRICRHHG ISRWPSRKIK KVNHSLSKLQ RVIESVQGAE  660
GAFGLTSLTA SPRSGAVGSI SRPYILNGSN QQSSPSSKPS ELHGEKKDSP TPTTPGKEGQ  720
AWIENQLLDG GILSQKELLL EHGRFLLDDG KGSNTSKTGS SSREASAGTP TSHGSCQGSP  780
ANGNALVNNP FVPSIHDQCI EVNGFPESAV RPPKEPNLSV ACSIPDAVLM TDPEEPCRGM  840
LIEDAGSSKD LKNLCPQVDA MVDEQVPEAC RTNPPCSDSA LKPSNTMPHI IARQEMKSVT  900
IKATYKEDII RFRISMSSGI VELKDEVAKR LKLEMGTFDI KYVDDDLEWV LVACDADLQE  960
CMEICRSLGI KMIRLSVHDI MSNFGSSCGS M

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008239167.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008239167.1	0.0	PREDICTED: protein NLP7-like
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A251P7F6	0.0	A0A251P7F6_PRUPE; Uncharacterized protein
STRING	XP_008239167.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4257	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]