PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008239077.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 333aa    MW: 36913.9 Da    PI: 4.8148
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008239077.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.8e-19116166155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     ++++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ +l+g
  XP_008239077.1 116 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDNAAIQLRG 166
                     59********.**********72....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.57E-31116175No hitNo description
SuperFamilySSF541711.77E-21117174IPR016177DNA-binding domain
PfamPF008472.0E-12117166IPR001471AP2/ERF domain
PROSITE profilePS5103223.657117174IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-30117174IPR001471AP2/ERF domain
SMARTSM003801.3E-37117180IPR001471AP2/ERF domain
PRINTSPR003673.5E-10118129IPR001471AP2/ERF domain
PRINTSPR003673.5E-10140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MNPAVKYTQH RSHTKLVANS AAEFESVRPR VVRISVTDGD ATDSSSDDEP AESSFCGRRR  60
VKRFINEITI ESCSRETDAV WRSRTTRTGR KRASPKSGGP ASRRTLKAVA AAPAGKKFRG  120
VRQRPWGKWA AEIRDPLRRV RLWLGTYDTA EEAAMVYDNA AIQLRGPDAL TNFAAPPAKS  180
LPDVKPVISS CYNSGDESHN NLCSPTSVLR CPSPSNEEAD SPSLKEEVPD IAEFRNVRDD  240
SCVSENFSEF SEYTSFESFI PDDIFDFQIP DFLEETSLRE VGILKEDFGD FGNFGNIFVD  300
SVRDFGFGSS ALCVDDHFQD IGDLFSSDPL VAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-20115173362ATERF1
3gcc_A7e-20115173362ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008239077.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008239077.10.0PREDICTED: ethylene-responsive transcription factor CRF2
TrEMBLM5W8N30.0M5W8N3_PRUPE; Uncharacterized protein
STRINGXP_008239077.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.27e-45cytokinin response factor 2