PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008239044.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ERF | ||||||||
Protein Properties | Length: 311aa MW: 34437.7 Da PI: 8.5428 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.5e-19 | 115 | 165 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p + r r++lg+++tae Aa a+++a+ kl+ge XP_008239044.1 115 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 165 59******9.**********954...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.22E-17 | 114 | 174 | No hit | No description |
SuperFamily | SSF54171 | 1.57E-22 | 115 | 172 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.7E-31 | 115 | 173 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-36 | 115 | 178 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.301 | 115 | 172 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-10 | 116 | 127 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.0E-13 | 116 | 165 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-10 | 138 | 154 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MDTMQDSKLA FGFSDTIDIR SSLSNLILTS NTNTLDSIFS HCPQTLSTTT TTTSNNSSVS 60 EPLGSSVYLR QRDLLQKFCD ESRANAAVSR FFQKNPVQSS ACSSTSYMAP CKKKLYRGVR 120 QRHWGKWVAE IRLPQNRMRV WLGTYDTAEA AAYAYDRAAY KLRGEYARLN FPNLKDPSKM 180 GFGDCARLNA VKTSVDAKIQ AICQKVKRER AKKNAKKSSN SSENEKAVMK VDSSPSSSSP 240 SGFGDGSGQE LVSLTPTPTV SEDGLWRCEN SPPSISTEWS MGMAEDLEFE GCSLARMPSY 300 DPELIWEVIA N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-20 | 112 | 172 | 2 | 63 | ATERF1 |
3gcc_A | 3e-20 | 112 | 172 | 2 | 63 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008239044.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT369557 | 0.0 | KT369557.1 Prunus pseudocerasus AP2/EREBP family transcription factor-like protein 25 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008239044.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF061 | ||||
Swissprot | Q9C7W2 | 3e-67 | ERF61_ARATH; Ethylene-responsive transcription factor ERF061 | ||||
TrEMBL | A0A314UGY3 | 0.0 | A0A314UGY3_PRUYE; Ethylene-responsive transcription factor ERF061 | ||||
STRING | XP_008239044.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7181 | 31 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64380.1 | 6e-43 | ERF family protein |
Publications ? help Back to Top | |||
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