PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008238928.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 611aa    MW: 69164.4 Da    PI: 4.8674
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008238928.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.66e-08510554247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      + WT+eE+++++d+vk   +  W++ +r +  ++t+++++s+++++
   XP_008238928.1 510 LQWTAEEEKRFKDLVKSNSPSFWNRASRWFR-KKTRENLVSYYFNV 554
                      57*****************************.9**********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010141.1E-1445137No hitNo description
Gene3DG3DSA:1.10.150.601.3E-1446143IPR001606ARID DNA-binding domain
SuperFamilySSF467741.44E-1747141IPR001606ARID DNA-binding domain
PROSITE profilePS5101119.27448141IPR001606ARID DNA-binding domain
SMARTSM005012.0E-1649142IPR001606ARID DNA-binding domain
PfamPF013887.6E-1156137IPR001606ARID DNA-binding domain
PROSITE profilePS511568.714410452IPR000949ELM2 domain
SMARTSM011890.0071412463IPR000949ELM2 domain
CDDcd001678.51E-4512555No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MAGWSSLTPG SVLDCVETND AYQKNGSCIG SDIDVRDGVE CDEDDDEVRL RCTFDQVLSV  60
FVKEIGDRGV ARPIPAVIDD RQPVDLFKLF CLVRDRGGYD WVSKNSLWSF VAKELGLDGG  120
ATASVKLIYF KYLNELEKWF RESCKSRSSG NGQSGLYGEF QLLSSELERE FRDLLLDGPE  180
QKGKGDGPVQ FESDENGKIE FNLSDTKDAY GMHAGADQCK DDDDEKVCND DQNGVLISLD  240
SLNKKENDRK RKRESLSGML NWVVQIAKQP NDPSIGVIPG PTNWKEHKGD ECWFQVIRAR  300
EALLLRRNVD SKTEESLLQK KLKTHPLLYE DNIVAGHQSS ERLRCSERFP NSVKSRSCPC  360
CSSCSVPQSN LISPRKKELD NISKEQAPAE VDLLTTNTMV CPSVDAPHEK HVSVGTLFQA  420
EVPDWTGVAS ESDIKWLGTR VWPLQCEEDS FLHETDLTGK GRPDLCGCRL PGSVLCIRFH  480
IAEARMKLKR ELGSLFYRWQ FDRMGEEVSL QWTAEEEKRF KDLVKSNSPS FWNRASRWFR  540
KKTRENLVSY YFNVFLVQSR SYQNRVTPKN IDSDDDETEF GSFSNGFGHD AVEVSANFVA  600
CSQNQQCTDL D
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008238928.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008238928.10.0PREDICTED: AT-rich interactive domain-containing protein 2 isoform X1
TrEMBLM5W8M50.0M5W8M5_PRUPE; Uncharacterized protein
STRINGXP_008238928.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF399678