PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008238914.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 326aa    MW: 35586.3 Da    PI: 10.0728
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008238914.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.71.8e-31255312359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYegeHnh+
  XP_008238914.1 255 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPAMLVVTYEGEHNHS 312
                     99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.7E-18205251IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.807.9E-33241312IPR003657WRKY domain
PROSITE profilePS5081130.928248314IPR003657WRKY domain
SuperFamilySSF1182906.54E-27250312IPR003657WRKY domain
SMARTSM007742.6E-38253313IPR003657WRKY domain
PfamPF031065.2E-27255311IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MAVDFMGYRN SSFSAKLEEN AVQEAASGLE SVEKLIRLLS QAQQNQHQDK YPSMVMDMDC  60
RAVADVAVSK FKKVISLLGR TRTGHARFRR APLTLTSGSS SSSQNQAQTQ ETFVKQAPLE  120
STKVYHATPI QQIPPPLHHH STVLESTKDS STTINFSYSA TTSFMSSLTG DSDSKQPLSS  180
SAFQITNMSQ VSSAGKPPLS SASLKRKCSS DNLGSGKCGA GSSGRCHCSK KRKLRLKRVV  240
RVPAISLKMA DIPPDDYSWR KYGQKPIKGS PHPRGYYKCS SVRGCPARKH VERALDDPAM  300
LVVTYEGEHN HSLSVAETSN LILESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-212513131576Probable WRKY transcription factor 4
2lex_A2e-212513131576Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008238914.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008238914.10.0PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX02e-99WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A314XGF80.0A0A314XGF8_PRUYE; Putative WRKY transcription factor 7
STRINGXP_008238914.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.11e-85WRKY DNA-binding protein 7