PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008238802.2
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 192aa    MW: 20709.3 Da    PI: 5.9831
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008238802.2genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.26.5e-162270154
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                    s+y+G+r  ++ g+Wv+eIr+p++   ++r++lg+f tae+Aa+a++ a+++l+
  XP_008238802.2 22 SRYHGIR--SRGGKWVSEIREPRK---TRRIWLGTFPTAEMAAAAYDVAALALK 70
                    7899**5..679*********843...5**********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.14E-152281No hitNo description
SuperFamilySSF541712.03E-172281IPR016177DNA-binding domain
PfamPF008473.2E-92270IPR001471AP2/ERF domain
PROSITE profilePS5103219.6122379IPR001471AP2/ERF domain
SMARTSM003807.8E-262385IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-252380IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MGRPGKLPKP TTMASNPSQK QSRYHGIRSR GGKWVSEIRE PRKTRRIWLG TFPTAEMAAA  60
AYDVAALALK RGDAVLNFPS SLDSYPVPAS TSPQDIRSAA AAAAAAAALQ GNEEPDNSLN  120
LIEKKTKYEY DMMMMSSTSL ASSVGMDEEE LFGMPNLLAN MAEGMLVSPP RPSDYPDSSG  180
NSDGADSRLW SY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1220831176Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008238802.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008238802.21e-138PREDICTED: ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ901e-37ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A314Z5841e-125A0A314Z584_PRUYE; Ethylene-responsive transcription factor ERF027
STRINGXP_008238802.11e-128(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.17e-26ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]