PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008238801.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ERF | ||||||||
Protein Properties | Length: 222aa MW: 24134.3 Da PI: 6.9477 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.4 | 1.1e-15 | 52 | 100 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 s+y+G+r ++ g+Wv+eIr+p++ ++r++lg++ t+e+Aa+a++ a+++l+ XP_008238801.2 52 SRYHGIR-CR-GGKWVSEIREPRK---TRRIWLGTYPTPEMAAAAYDVAALALK 100 78****9.55.7*********843...5**********************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.41E-14 | 52 | 111 | No hit | No description |
SuperFamily | SSF54171 | 2.75E-17 | 52 | 111 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.6E-9 | 52 | 100 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.5E-24 | 53 | 115 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.137 | 53 | 109 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-24 | 53 | 110 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MNREKAPPST TPFYTKPSHI LLSLSSPPEL VQLLKHPPLP TTMASSSCGK HSRYHGIRCR 60 GGKWVSEIRE PRKTRRIWLG TYPTPEMAAA AYDVAALALK RGDAVLNFPS SIASYPVPAS 120 TSPEDIRSAA AAAAAAALQW NEEANNSLKQ RESQKKQEND MRMMMNSSSL ASSVGIDEEE 180 LFGMPNLLTE MAEGMLLSPP RPPDYPDSSG NSDGGESGLW SF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008238801.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008238801.2 | 1e-163 | PREDICTED: ethylene-responsive transcription factor ERF027-like | ||||
Swissprot | Q9FJ90 | 1e-41 | ERF25_ARATH; Ethylene-responsive transcription factor ERF025 | ||||
TrEMBL | M5WDQ5 | 1e-107 | M5WDQ5_PRUPE; Uncharacterized protein | ||||
STRING | XP_008238801.1 | 1e-129 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF562 | 32 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 2e-35 | ERF family protein |
Publications ? help Back to Top | |||
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