PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008238800.2
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 244aa    MW: 26157.8 Da    PI: 6.0232
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008238800.2genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.71.9e-1572121155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++y+G+r ++  g+Wv+eIr+p++   ++r++lg++ t+e+Aa a++ a+++l+g
  XP_008238800.2  72 TRYHGIR-CR-GGKWVSEIREPRK---TRRIWLGTYPTPEMAASAYDVAALALKG 121
                     589***9.55.7*********843...5***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.73E-2572131No hitNo description
PfamPF008472.1E-972121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-2573130IPR001471AP2/ERF domain
PROSITE profilePS5103219.45473129IPR001471AP2/ERF domain
SMARTSM003808.4E-2673137IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-1774131IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MSCVTRIKIL TDIAPNITHP LTFLLSPPSA TPFYTKSSHV LLSLSSPPEL VQLLKHPPLP  60
TTMASSSCGK QTRYHGIRCR GGKWVSEIRE PRKTRRIWLG TYPTPEMAAS AYDVAALALK  120
GGHAVLNFPS SIALYPVPAS KSPEDIRSAA AAAAAAVSAA LQSNEEANNS LELKESPKKQ  180
EDDMTTMMNS TSLASSVGMD EEELFGMPNL LAEMAEGMLL SPPRPPDYPE SGNSDGGESG  240
LWSF
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008238800.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008238800.21e-179PREDICTED: ethylene-responsive transcription factor ERF027-like
SwissprotQ9SJR03e-40ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLM5WDL21e-114M5WDL2_PRUPE; Uncharacterized protein
STRINGXP_008238800.11e-130(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.11e-37ERF family protein