PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008238782.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ERF | ||||||||
Protein Properties | Length: 275aa MW: 29454.9 Da PI: 4.6391 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.3 | 1.4e-16 | 102 | 150 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r ++ g+Wv+eIr+p++ +kr++lg+f tae+Aa+a++ a+++l+g XP_008238782.1 102 TYRGIR-CR-GGKWVSEIREPRK---TKRIWLGTFPTAEMAAAAYDVAALALKG 150 69***9.55.7*********843...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 20.047 | 102 | 158 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.8E-26 | 102 | 166 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.1E-18 | 102 | 158 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.5E-10 | 102 | 150 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.9E-26 | 102 | 158 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.98E-15 | 103 | 158 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MADPNPNSPN SLTNARQILL DQSTPTVASL DFHPPPPTHQ PLPPQPPPPP PPPPHTPYSL 60 LSLQHHTCEL TETPSPSTRA LEVDTVPKPT TMASTSSGKH PTYRGIRCRG GKWVSEIREP 120 RKTKRIWLGT FPTAEMAAAA YDVAALALKG ADVVLNFPGF IGSYPVPAST SAQDICSAAA 180 AAAATLRKNG DSRESPGQRQ KDDKDDVTVS NSINLESSSV GDFMDEEELF GMPNLLMDMA 240 EGMLVSPPRM NDSPPSDYDD SPGNSDGGES LLWSY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-14 | 99 | 158 | 11 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00558 | DAP | Transfer from AT5G52020 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008238782.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT369535 | 0.0 | KT369535.1 Prunus pseudocerasus AP2/EREBP family transcription factor-like protein 3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008238782.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF027-like | ||||
Swissprot | Q9FJ90 | 3e-47 | ERF25_ARATH; Ethylene-responsive transcription factor ERF025 | ||||
TrEMBL | A0A314ZSR2 | 1e-143 | A0A314ZSR2_PRUYE; AP2/EREBP family transcription factor-like protein 3 | ||||
STRING | XP_008238782.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF562 | 32 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 3e-37 | ERF family protein |
Publications ? help Back to Top | |||
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