PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008238772.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

TCP

Protein Properties

Length: 330aa MW: 34125.9 Da PI: 5.6232

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008238772.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	112.6	5.4e-35	86	157	2	73
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 ++++ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a++ai+e+tgt++ +a ++ XP_008238772.1 86 PTRRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETVRWLLEHAEEAIIEATGTGTVPAIAV 157 57999***********************************************************99888444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.9E-29	91	156	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.994	92	146	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MTSYLEDQDD DGGTSDLSTS TGDPEDNNNN GNGVVSTQPN FDETTAFQQL KEEPIDSDPP 60 PQAHSIGMVP VAMQMPMSVA VPVSNPTRRA STKDRHTKVE GRGRRIRMPA TCAARIFQLT 120 RELGHKSDGE TVRWLLEHAE EAIIEATGTG TVPAIAVSVG GTSSGLAPVG PAAPQGLVPV 180 WAVGGAGLMV PANAFWMGPV GSGGGPSGPQ PQIWALSPTV TPVFNVAGAT RPVSSFVANN 240 GGGVEVRAPS PALSNSAVST STVGPRAAKR SSTTMAPSVS SSSNNSNGSG SGASKAQMLR 300 DFSLEIYDKQ ELQFMGRPVG SPTTHQHQTQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008238772.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008238772.1	0.0	PREDICTED: transcription factor TCP9-like
Swissprot	O64647	2e-52	TCP9_ARATH; Transcription factor TCP9
TrEMBL	M5WG46	0.0	M5WG46_PRUPE; Uncharacterized protein
STRING	XP_008238772.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2118	30	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	1e-40	TCP family protein