PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008238769.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 485aa    MW: 54106.9 Da    PI: 6.9828
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008238769.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.6e-13305351455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er+RR+++N++f  Lr+++P+       K++K++ L  Av YI++L+
  XP_008238769.1 305 NHVEAERQRREKLNHRFYVLRSVVPNV-----SKMDKSSLLADAVSYINQLK 351
                     799***********************6.....5*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.3E-3722212IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474594.58E-18299365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.97E-15299355No hitNo description
PROSITE profilePS5088816.945301350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-18304363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-10305350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-16307356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MEEIISSCSS PNFGPENPAI FQQRLQFLVQ SRPECWVYSI FWRASKDSNG QVALSWGAGD  60
FQIDRDLTSK TTNKVTNNYQ PKIGLTKKVT SREAEEALFH EDMVDLEMRL VDHGDVTGSE  120
WFYFYSVSLT QSFAAGHATN NILGRAFCSG GFVWLAGVHE LQFYECERVK EARMHGIQTL  180
VCIATSCGVL ELASVDVIKE DWGLVHLSIS LFGSDNNRIS QQGSRDGDVL VPPLENGMFL  240
GVQKELTRQE CGRKEVAPTN IGGLSPESPS DSIGNFTSEN TAKPRSKKRG RSSTNGASRE  300
SALSNHVEAE RQRREKLNHR FYVLRSVVPN VSKMDKSSLL ADAVSYINQL KAKVEELEAK  360
IQEQPPTPKT GSVSHLDHQL SKSSSSIVDS HHHHHSSYNN RTVVPVEVDV KIMGSEAIIR  420
VQCPDQDYPY ARLMNALKGL GLQVYHASIS SVKELMIQDV VARVPYGFNS DQEAMRTAIM  480
KRWHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A6e-23112122192Transcription factor MYC3
4rqw_B6e-23112122192Transcription factor MYC3
4rs9_A6e-23112122192Transcription factor MYC3
4yz6_A6e-23112122192Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008238769.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008238769.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A251P5R50.0A0A251P5R5_PRUPE; Uncharacterized protein
STRINGXP_008238769.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.18e-56bHLH family protein