PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008238581.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 330aa    MW: 36928.1 Da    PI: 10.1686
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008238581.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.52.1e-31262320360
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                     D y+WrKYGqK++kgs++prsYY+C+s  gCp++k+ver+ edp+++++tYeg+H+h+k
  XP_008238581.1 262 DDYTWRKYGQKPIKGSPYPRSYYKCSSVrGCPARKHVERCLEDPTMLVVTYEGDHQHPK 320
                     99************************988****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.9E-16212258IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.5E-33248320IPR003657WRKY domain
PROSITE profilePS5081129.746255321IPR003657WRKY domain
SuperFamilySSF1182901.2E-26258320IPR003657WRKY domain
SMARTSM007743.5E-36260320IPR003657WRKY domain
PfamPF031063.6E-26262319IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MNPGLDFKIH EAAQSSLKHA HHLFGCVSEN KQKRSVQEVS LIAQDAVEEF RKLLALLDGS  60
LLSNQKRIRR GPLPKSHDIN QVELLDSPNP SSQNTTHNWP QPHTLPQPRN CLVRQFFSAV  120
HQSDQATANV IHSNSFSIAR EKKPNPALQQ GQSEAGVVLP NNFIMGLNQF SQKPTSTSLI  180
SMDGSSPNTR MIHYSSSELL GSRDCTSMFS SKRKCGVKSE EATPRCLVSA GGCHCSKRRK  240
LRIKRRIRVP ALSNKLADIP PDDYTWRKYG QKPIKGSPYP RSYYKCSSVR GCPARKHVER  300
CLEDPTMLVV TYEGDHQHPK ITFQAPTVAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-22248318271WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241247RIKRRIR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008238581.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008238581.10.0PREDICTED: probable WRKY transcription factor 15
TrEMBLA0A251P5580.0A0A251P558_PRUPE; Uncharacterized protein
TrEMBLM5WRE00.0M5WRE0_PRUPE; Uncharacterized protein
STRINGXP_008238581.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144241318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.17e-51WRKY DNA-binding protein 21