PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008238556.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

GRAS

Protein Properties

Length: 813aa MW: 88684.5 Da PI: 6.3286

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008238556.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	328.9	9.9e-101	449	812	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 ++L+++Ae v +g+++ aq +Larl+++ sp g+p+qR+a+yf+eAL+ l+ + + + + pp++ ++ +++ ++ a+k+fsevsP+++f ++ XP_008238556.1 449 LDQLYKAAELVGTGNFSHAQGILARLNHQLSPVGKPLQRAAFYFKEALQLLLLMNNPAT--SPPPRTPTPFDVIFKMGAYKVFSEVSPLIQFVNF 541 679************************************************955554..57888999999******************* PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189 t+Nqa+leav+ +++Hi+Dfdi+ G++W++++q+L R+ + +pslRiT+++sp++++ el ++++L++fA+e+g++fe +v+ ++l++ XP_008238556.1 542 TCNQALLEAVSDTDQIHIVDFDIGFGAHWASFMQELPVRNrgATAPSLRITAFASPSTHHPVELGLMRDNLTQFANEIGISFELEVVNFDSLDQS 636 *********************************999556699************************************988877776 PP GRAS 190 ..eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282 +l +r + +E++aVn+ + ++ +++++l++ +L++vk+lsPk++v ++ +d+++ +F +++l+al+ y l++sl+a +s++ XP_008238556.1 637 sySLPIFRANDNETVAVNFPI--WSTSNQPAALPN----LLRFVKQLSPKIMVSLDRGCDRSDLPFPQHILQALQSYINLLESLDAV-NVTSDAV 724 22444567777****99..666678999999....*****************************************665.579 PP GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +k+Er+ll+++i++ v + ++ ++ W+ + +aGF+pvp+s+++++qa++++++++ +g++ve++++slvl+W++r+L+s+SaWr XP_008238556.1 725 NKIERFLLQPKIESTVLGRLRA----PDKMPLWKTLFASAGFTPVPFSNFTETQAECVVKRTPARGFHVEKRQESLVLCWQRRELISASAWR 812 *************99998....999************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	44.503	422	792	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.4E-98	449	812	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 813 aa Download sequence Send to blast
MPFHFQQGKG VLEIANTSLA SIFTDNVNSN SDKYLSQKDD CFFYNNSFVS SEPNSVLHMR 60 RSPSPPTSAS TLSSSFNGGG GGGGDKTTPL AAETSPPVGP ASTKDEWACE LQSIPSGGLE 120 AVTGSGGVER CGLGLGGLED WETMLSETAA SPGQDQSLLR WIAGDVDDTS FGLKQLLQSG 180 NQNGSNNNNS NPLDFDGNAG LGIVDQGPGF DLIGSSVSGT SVSGPNFGFS SSGFVSNGNN 240 SSNGKVGFVP GSSGLLNYKV SNVGLMHNNN NGGGNSVNCN IQNPIFFNSS NTMALPVSLP 300 LGHVVYQQQQ FESSPDEKPQ ILNPQLFVNN PNQQSQLSQN PNFFMPLAYA QQEQHHLLQS 360 QAKRHNSGGI VDPGSHQIQK VQFSDPGHEF LLRKHQQQQQ QQFGYPQGMQ FLPQQHHVPQ 420 KPLMVPKPKV AVGHGEEMAH QQQLQHTLLD QLYKAAELVG TGNFSHAQGI LARLNHQLSP 480 VGKPLQRAAF YFKEALQLLL LMNNPATSPP PRTPTPFDVI FKMGAYKVFS EVSPLIQFVN 540 FTCNQALLEA VSDTDQIHIV DFDIGFGAHW ASFMQELPVR NRGATAPSLR ITAFASPSTH 600 HPVELGLMRD NLTQFANEIG ISFELEVVNF DSLDQSSYSL PIFRANDNET VAVNFPIWST 660 SNQPAALPNL LRFVKQLSPK IMVSLDRGCD RSDLPFPQHI LQALQSYINL LESLDAVNVT 720 SDAVNKIERF LLQPKIESTV LGRLRAPDKM PLWKTLFASA GFTPVPFSNF TETQAECVVK 780 RTPARGFHVE KRQESLVLCW QRRELISASA WRC

Sequence ? help Back to Top

Protein Sequence Length: 813 aa Download sequence Send to blast

MPFHFQQGKG VLEIANTSLA SIFTDNVNSN SDKYLSQKDD CFFYNNSFVS SEPNSVLHMR  60
RSPSPPTSAS TLSSSFNGGG GGGGDKTTPL AAETSPPVGP ASTKDEWACE LQSIPSGGLE  120
AVTGSGGVER CGLGLGGLED WETMLSETAA SPGQDQSLLR WIAGDVDDTS FGLKQLLQSG  180
NQNGSNNNNS NPLDFDGNAG LGIVDQGPGF DLIGSSVSGT SVSGPNFGFS SSGFVSNGNN  240
SSNGKVGFVP GSSGLLNYKV SNVGLMHNNN NGGGNSVNCN IQNPIFFNSS NTMALPVSLP  300
LGHVVYQQQQ FESSPDEKPQ ILNPQLFVNN PNQQSQLSQN PNFFMPLAYA QQEQHHLLQS  360
QAKRHNSGGI VDPGSHQIQK VQFSDPGHEF LLRKHQQQQQ QQFGYPQGMQ FLPQQHHVPQ  420
KPLMVPKPKV AVGHGEEMAH QQQLQHTLLD QLYKAAELVG TGNFSHAQGI LARLNHQLSP  480
VGKPLQRAAF YFKEALQLLL LMNNPATSPP PRTPTPFDVI FKMGAYKVFS EVSPLIQFVN  540
FTCNQALLEA VSDTDQIHIV DFDIGFGAHW ASFMQELPVR NRGATAPSLR ITAFASPSTH  600
HPVELGLMRD NLTQFANEIG ISFELEVVNF DSLDQSSYSL PIFRANDNET VAVNFPIWST  660
SNQPAALPNL LRFVKQLSPK IMVSLDRGCD RSDLPFPQHI LQALQSYINL LESLDAVNVT  720
SDAVNKIERF LLQPKIESTV LGRLRAPDKM PLWKTLFASA GFTPVPFSNF TETQAECVVK  780
RTPARGFHVE KRQESLVLCW QRRELISASA WRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-30	467	812	22	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008238556.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008238556.1	0.0	PREDICTED: scarecrow-like protein 22
TrEMBL	A0A251P512	0.0	A0A251P512_PRUPE; Uncharacterized protein
STRING	XP_008238556.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13269	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-118	GRAS family protein