PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008238414.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 350aa    MW: 39109.8 Da    PI: 5.362
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008238414.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-20199249255
             AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp   + +  r++lg+f+ta eAaka+++a+ kl+g
  XP_008238414.1 199 HYRGVRQRP-WGKYAAEIRDP---NrRGSRVWLGTFDTAIEAAKAYDRAAFKLRG 249
                     8********.**********9...4334*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.7E-32198258IPR001471AP2/ERF domain
CDDcd000182.21E-31198257No hitNo description
SMARTSM003805.7E-37199263IPR001471AP2/ERF domain
PfamPF008471.8E-14199249IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-23199258IPR016177DNA-binding domain
PROSITE profilePS5103224.25199257IPR001471AP2/ERF domain
PRINTSPR003671.4E-13200211IPR001471AP2/ERF domain
PRINTSPR003671.4E-13239259IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MALSSDMAGL DQVSALELIK NHLLGEFSPA AKSSVTELSD SASSFPQNQW SPEANSDLSR  60
SQSDSLCSKS SSTFDSSIEI SDYLNSNEIF EFEFNSTDFL DFEAKPQVID LTTPKSADLR  120
SQNSFEFESK PQISDDFFEF EQKPQLLNRT PPKPANPTRK PSLTVSLPNK TEWIHFASSD  180
PAVKPPVQKS SSNEEKKKHY RGVRQRPWGK YAAEIRDPNR RGSRVWLGTF DTAIEAAKAY  240
DRAAFKLRGS KAILNFPLEA GKAEPVAAVE RKRRREEDRE EVKAVAVKKE RLTEAPEAVG  300
FVRDMPLTPS SWTGFWDSES LEDVKGIFSV PPLSPLSPHP TMGYPQLMVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-29196264270ATERF1
3gcc_A2e-29196264270ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1270274RKRRR
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008238414.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM2117140.0KM211714.1 Prunus pseudocerasus EREBP-like factor (ERF1) mRNA, complete cds.
GenBankKT3695390.0KT369539.1 Prunus pseudocerasus AP2/EREBP family transcription factor-like protein 7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008238414.10.0PREDICTED: ethylene-responsive transcription factor 5
SwissprotO803412e-73EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLM5WML20.0M5WML2_PRUPE; Uncharacterized protein
STRINGXP_008238414.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.11e-60ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]