PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008238177.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family G2-like
Protein Properties Length: 409aa    MW: 45952.9 Da    PI: 7.961
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008238177.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.84.2e-32214267255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  XP_008238177.1 214 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 267
                     9****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.15E-15211267IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-28212267IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-23214267IPR006447Myb domain, plants
PfamPF002492.8E-7215266IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MELFPAQPDL SLQISPPNSK PTSSSSWRRS SREEQEEVDL GFWRRALDSR TSFSSSIAKP  60
DTGFELELSN PRVYAHGLHH HHHQHHQSNI SSNHIIHHLN QNGNVFQGFE QNQFSVPQVN  120
HHPLLNVHDQ QLQLQSQSQS DHLGFLRPIR GIPVYQNPPP NLFPFSSQKP LDSNSCTSTS  180
TITSSSSPLF QAQGGLLRSR FLSRFPAKRS MRAPRMRWTT TLHARFVHAV ELLGGHERAT  240
PKSVLELMDV KDLTLAHVKS HLQMYRTVKT TDKAAPSSGQ SDVYENASSG DTTEDIMLDL  300
QNPRRSCDQL SPAQQQGSRS IPQVQDNKEY YGLWSNSSSR EAWLHANTKD SSAPANIPSL  360
DDQEKEDMMD PKGLSYERIS DVSSSTTNIS AGTRSPRKPN LEFTLGRPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-16215269458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-16215269458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-16215269458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-16215269458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-16215269458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-16215269458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-16215269458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-16215269458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008238177.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008238177.10.0PREDICTED: probable transcription factor KAN2 isoform X1
SwissprotQ9C6162e-68KAN2_ARATH; Probable transcription factor KAN2
TrEMBLM5WUE20.0M5WUE2_PRUPE; Uncharacterized protein
STRINGXP_008238177.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59683452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.13e-70G2-like family protein
Publications ? help Back to Top
  1. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]