PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008237971.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | WOX | ||||||||
Protein Properties | Length: 219aa MW: 25270.3 Da PI: 5.1414 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.3 | 8.5e-21 | 101 | 161 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql+ Le+ Fe+ + +p +++++e++++l +++e++V++WFqNrRa+ k+ XP_008237971.1 101 RQRWTPTPVQLQMLERIFEEgTGTPCKQKIKEITMELtqhgQISETNVYNWFQNRRARSKR 161 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 100.9 | 9.1e-33 | 100 | 163 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q+++Le+++++G+ tP k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq XP_008237971.1 100 ARQRWTPTPVQLQMLERIFEEGTGTPCKQKIKEITMELTQHGQISETNVYNWFQNRRARSKRKQ 163 789***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-17 | 95 | 165 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.317 | 97 | 162 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.9E-13 | 99 | 166 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.65E-17 | 100 | 164 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.33E-13 | 101 | 163 | No hit | No description |
Pfam | PF00046 | 1.1E-18 | 101 | 161 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MMEWQQQQQQ QQIQNQQQII HHLQNPEDGI GNGNGGLYVK VMTDEQMELL RRQIAVYATI 60 CEQLVEMHKA VTAQQDLSGM RLGNFYCDPF MASGGHKITA RQRWTPTPVQ LQMLERIFEE 120 GTGTPCKQKI KEITMELTQH GQISETNVYN WFQNRRARSK RKQSVPAQNN GESEAEPEVE 180 SPRDEKTKPE DIMSLDNSAP RAENMYLQSP ELGFGNFDW |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 154 | 162 | RRARSKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008237971.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008237971.1 | 1e-165 | PREDICTED: WUSCHEL-related homeobox 8-like | ||||
Swissprot | Q5QMM3 | 1e-77 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | A0A314UFW2 | 1e-148 | A0A314UFW2_PRUYE; WUSCHEL-related homeobox 8 isoform X2 | ||||
TrEMBL | M5WVH2 | 1e-148 | M5WVH2_PRUPE; Uncharacterized protein | ||||
STRING | XP_008237971.1 | 1e-164 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1855 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 5e-75 | WUSCHEL related homeobox 13 |
Publications ? help Back to Top | |||
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