PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008237887.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family SBP
Protein Properties Length: 1070aa    MW: 118282 Da    PI: 8.1261
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008237887.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.89.8e-41145222178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +Cqv++C++dls+ak+yhrrhkvCe+hska+++ v++++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+
  XP_008237887.1 145 MCQVDNCKEDLSNAKDYHRRHKVCEIHSKATKAPVAKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 222
                     6**************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.8E-34140207IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.718143220IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.27E-37144224IPR004333Transcription factor, SBP-box
PfamPF031108.0E-30146219IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.203.9E-4321364IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.9E-4864955IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.49E-5864964IPR020683Ankyrin repeat-containing domain
CDDcd002042.24E-4867960No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1070 aa     Download sequence    Send to blast
MEDVGGQVAA PIFIHQTLSG RFCDVPAMAR KRDLPYQGSN YQHPHSQQPR FTTAGNNWNP  60
NVWDWDNVRF VAKPLDAEML HLGSSRTEQG KKEGASGAVK NTAEDEDDES LQLNLAGGLT  120
SVEEPVPRPN KRVRSGSPGN GSYPMCQVDN CKEDLSNAKD YHRRHKVCEI HSKATKAPVA  180
KQMQRFCQQC SRFHPLSEFD EGKRSCRRRL AGHNRRRRKT QPEDVTSRLT LPGDGDNKSI  240
GNLDIVNLLA AIARPQGKND VRNINCSSVL DREQLLQILS KINSLPLPAD LAAKLPNLGS  300
LNRKTVELLA LDLQNKLNGR TSASTVDLLT VLSATLAASS PEALAMLSQK SSQSSDSEKT  360
KLTCSDQAAG PNLHKIPTQE FNSAGGERSS TSYQSPMEDS DCQVQETRVN LPLQLFSSSP  420
ENDSPPKLAS SRKYFSSDSS NPTEDRSPSS SPPVVQTLFP MKSMAETVKS EKLSISKEVN  480
ANPDSSRTRG CNMPFDLFRG SNRGADASSI QSFPHQAGYT SSGSDHSPSS LNSDPQDRTG  540
RILFKLFDKD PSHLPGSLRT QIYNWLSNSP SEMESYIRPG CVVLSVYVSM SSAAWEQFEG  600
NLVQRVSSLV QSSDCDFWRS GRFLVHTGRQ LASHKDGKIR ICKAWRSCSS PELISVSPLA  660
VVGGQETSLV LRGRNLTNLG TRIHCTYLGG YTSKEATGST YHGTMYDEIN LGSFQVHDAS  720
PGVLGRCFIE VENGFKGNGF PVIIADATIC RELRLLESVF DAEAKACDVI SEDENRDYGR  780
PTSREEVLHF LNELGWLFQR KRICSMLQEP RYSLGRFKFL LTFTVEKDCC VLVKTLLDIL  840
FERNLDGDGL SGESLGMLSD IQLLNRAVKR RCRKMVELLV NYSVTSSDKR YIFPPNLSGP  900
GGMTPLHLAA CMSNTDDMID ALTNDPQEIG LNCWNSLLDA NGQSPYAYSL MRNNYSYNKL  960
VARKLADRRN SQVTVTIGNE IEQPQMTMEL EHRTSTRFRQ GSGSCAKCAM AASKYRRRVP  1020
GAQGLLQRPF IHSMLAIAAV CVCVCLFLRG SPDIGLVAPF KWENLDFGTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-31136219184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1865870RAVKRR
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269|PubMed:15703061}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00155DAPTransfer from AT1G20980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008237887.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008237887.10.0PREDICTED: squamosa promoter-binding-like protein 14
SwissprotQ8RY950.0SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBLA0A251P2S50.0A0A251P2S5_PRUPE; Uncharacterized protein
STRINGXP_008237887.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96943139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.10.0squamosa promoter binding protein-like 14
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Liu J, et al.
    Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.).
    Front Plant Sci, 2016. 7: p. 21
    [PMID:26870051]