PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008237819.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Whirly
Protein Properties Length: 236aa    MW: 25826.8 Da    PI: 10.5107
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008237819.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly2033.6e-63551902137
          Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkv 96 
                     ++k+kaal++++v+ptf++l+sgnl+++r+G ++l++++a++er+ydWekkq+falsatev++l++l++k+sceffhdp++k+sn+G+vrk+l++
  XP_008237819.1  55 IFKGKAALSLNPVLPTFTKLESGNLVVSRRGVVMLKFTPAIGERRYDWEKKQVFALSATEVGSLISLGPKDSCEFFHDPSMKSSNAGQVRKSLSI 149
                     9********************************************************************************************** PP

          Whirly  97 ePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                     + ++dG+G++v+l+v n+l+k++e+f vPv+ aefav++++
  XP_008237819.1 150 KCHADGTGYLVSLTVVNNLLKTKENFIVPVTAAEFAVMKTA 190
                     ***************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.106.5E-7342209IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544472.67E-6448209IPR009044ssDNA-binding transcriptional regulator
PfamPF085362.5E-5955189IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MMKVLRLLSS SRNQFPTRGA LSMHAYTHST SFSTASKSFS VKGTSAHNVF ASFDIFKGKA  60
ALSLNPVLPT FTKLESGNLV VSRRGVVMLK FTPAIGERRY DWEKKQVFAL SATEVGSLIS  120
LGPKDSCEFF HDPSMKSSNA GQVRKSLSIK CHADGTGYLV SLTVVNNLLK TKENFIVPVT  180
AAEFAVMKTA CSFALPHIMG WDRLMSNMPS GVGRQQSNVG GQQSKVVPQL LDEWDR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A1e-844920811170Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B1e-844920811170Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C1e-844920811170Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D1e-844920811170Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008237819.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008237819.11e-176PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial
SwissprotD9J0342e-90WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A251MQG41e-150A0A251MQG4_PRUPE; Uncharacterized protein
STRINGXP_008237819.11e-175(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113833338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.16e-88WHIRLY 2