PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008237306.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 418aa    MW: 48493 Da    PI: 9.8635
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008237306.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.81.4e-2142131191
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                     +fYn+YA  +GF +r ++s   k+++ei +++fvC k+g  ++++++  +++r+r  +r++Ckak++v k++ ++k+ ++ ++  HnH+++p
  XP_008237306.1  42 NFYNRYAFLAGFCIRLHSSFWGKNKKEILRKEFVCCKQGAYRKDETR--ERKRQRGISRCDCKAKIVVVKTNrSKKYTISLFVDGHNHKMTP 131
                     6**************************************99998877..9999************99888777****************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.0E-1942131IPR004330FAR1 DNA binding domain
PfamPF105513.8E-19230292IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MSGGSGSDDC VTDNGRIYIP KVRNEETPAV GMKFDLLDLV YNFYNRYAFL AGFCIRLHSS  60
FWGKNKKEIL RKEFVCCKQG AYRKDETRER KRQRGISRCD CKAKIVVVKT NRSKKYTISL  120
FVDGHNHKMT PSERVHLLRS HRRISNSTKV LTKQLGSVNI LIHQKVSIFE VQSGGMDKMG  180
FIKNDIYNLE CNVNGKLRNH DIELVTELRE MAMTGLVDVF GQMQLLDGHT ACAFLSKETI  240
ESFIWMFKEF KKAMPGGEPK TIITDQDAAM TRAISIAFPT TFHRLCIWHI TSKFSVKLPH  300
FAFKEYWSEF QKVIWDTDNK DEFDAKWNIV VTKAGLTDHP WLRSMFDLRK SWVPAYARHF  360
FAAGMSSSQR AECSHAFFKQ YISRRNSLMD FIIRFERALS HQRQKELVVD HVDAFEVA
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008237306.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2535480.0AC253548.1 Prunus persica cultivar Lovell clone JGIBIXB-13B9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008237306.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_008237306.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-53FAR1-related sequence 5