PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008237220.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 167aa MW: 18349.2 Da PI: 8.394

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008237220.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.6	4.9e-09	28	54	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++ +t Ck+G rCkF+H++ XP_008237220.1 28 PGEPDCPYLIKTQRCKFGMRCKFNHPK 54 5789*********************96 PP
2	zf-CCCH	38.2	2.4e-12	77	101	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f++++G+Ck+G++CkF+H++ XP_008237220.1 77 EPPCAFYLKMGQCKFGATCKFHHPK 101 79*********************96 PP
3	zf-CCCH	23.2	1.2e-07	149	164	4	19
---SGGGGTS--TTTT CS zf-CCCH 4 elCrffartGtCkyGd 19 ++C+f+++tG CkyG+ XP_008237220.1 149 PECPFYLKTGSCKYGA 164 89*************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.624	27	55	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.34	27	54	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.1E-5	29	54	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.83E-5	32	57	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.9E-4	33	55	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.4E-6	74	101	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.079	74	102	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.1E-10	77	101	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.92E-6	77	102	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.1E-5	79	100	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	8.136	145	164	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	19	145	166	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.8E-5	149	164	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MSSPAFPASN EPKKVPLVAP SEFLSERPGE PDCPYLIKTQ RCKFGMRCKF NHPKDKLAAA 60 VASENSDVFA LPERPSEPPC AFYLKMGQCK FGATCKFHHP KDIQIPSAQQ ENKIGEIGTT 120 IQLEGTGFAV KPPALSFNSK ELPVRPVEPE CPFYLKTGSC KYGATWA

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269\|PubMed:11595801, ECO:0000269\|PubMed:12530963}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008237220.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008237220.1	1e-120	PREDICTED: zinc finger CCCH domain-containing protein 37-like
Swissprot	Q941Q3	7e-54	C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBL	A0A251PL21	7e-98	A0A251PL21_PRUPE; Uncharacterized protein
STRING	XP_008237220.1	1e-120	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7558	33	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	3e-56	floral homeotic protein (HUA1)