PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008237190.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Nin-like

Protein Properties

Length: 959aa MW: 105541 Da PI: 5.2232

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008237190.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.8	2.5e-29	599	650	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ XP_008237190.1 599 AEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 650 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.075	583	670	IPR003035	RWP-RK domain
Pfam	PF02042	2.5E-26	602	650	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.54E-22	854	941	No hit	No description
Gene3D	G3DSA:3.10.20.240	8.2E-25	856	938	No hit	No description
SMART	SM00666	5.1E-23	859	941	IPR000270	PB1 domain
PROSITE profile	PS51745	22.854	859	941	IPR000270	PB1 domain
CDD	cd06407	6.89E-32	860	940	No hit	No description
Pfam	PF00564	4.9E-18	860	940	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 959 aa Download sequence Send to blast
MEYPVTPKEK GSDHWASSRA QVENLGSLDV GTRNSISEDM FNNISELMNF DTYAGWCSPA 60 AMDQISASFG VPSCPSVTYA PLDALNFAEQ NGEALPGTEG GETFNVGGSS FSCEDKIVFQ 120 QMDNPQFGVS TDSHDANDLA AKLNNGSFQQ NNVMDVGKYM ISRPPGLSLN EKMLKALSLF 180 KESSGGGILA QLWVPVKYGD HYLLSTCEQP YLLDHILAGY REVSRTFTFP AEEKQGSILG 240 LPGRVFVSKV PEWTSNVSYY NKAEYLRVDH AVNHQVRGSI ALPVFNFDSE MSCCAVLELV 300 STKEKPNFDT EMEIVCNALQ AVNLRTTLPP RLHPQCLSMN QRAALTEITD VLRAVCHAHI 360 LPLALTWIPC CYSEGDGDEI RRVRVRGGIT NSNEKSILCI DETACYVNDR TMQGFVHACV 420 EHHLEEGEGI AGKALKSNHP FFLHDVKVYD IYEYPLVHHA RKYGLNAAVA IRLRSTYTGD 480 DDYILEFFLP VNVKGSSEQQ LLLNNLSGTM QKMCKSLRTV SDAELAGVQG SNTGFQKGPI 540 PNSPQQRNSQ TASSDSELNS IENMPSDVFN RRNVGIEAEN PREQAPGSRR QMEKKRSTAE 600 KNVSLSVLQQ YFSGSLKDAA KSIGVCPTTL KRICRQHGIS RWPSRKINKV NRSLKKIQTV 660 LDSVQGVEGG LKYDPTTGGF VATGSIIQDF DAQKSRLFPE KSLPVQNSEL VTQDPVPVPS 720 VSCNNGESLA IKLEEDGCCI PTSHEEGVKK QNIPLMPQRD SKPIAIEGNK WGHSKNSLKL 780 ENSDCHFVSQ SSSSLAAADD MDTGVDGDDG IVEYNQHTSS SMTDSTNCSG STLRSSSSQS 840 FEEQKQPNMN ASSVENGSKI TVKATYKEDT IRFKFDPSVG CFQLYEEVAK RLKLQNGTFQ 900 LKYLDDEEEW VMLVSDADLR ECLEILDDIG TRSVKFMVRD TPFGVGSSGS SNCFLAGGL

Sequence ? help Back to Top

Protein Sequence Length: 959 aa Download sequence Send to blast

MEYPVTPKEK GSDHWASSRA QVENLGSLDV GTRNSISEDM FNNISELMNF DTYAGWCSPA  60
AMDQISASFG VPSCPSVTYA PLDALNFAEQ NGEALPGTEG GETFNVGGSS FSCEDKIVFQ  120
QMDNPQFGVS TDSHDANDLA AKLNNGSFQQ NNVMDVGKYM ISRPPGLSLN EKMLKALSLF  180
KESSGGGILA QLWVPVKYGD HYLLSTCEQP YLLDHILAGY REVSRTFTFP AEEKQGSILG  240
LPGRVFVSKV PEWTSNVSYY NKAEYLRVDH AVNHQVRGSI ALPVFNFDSE MSCCAVLELV  300
STKEKPNFDT EMEIVCNALQ AVNLRTTLPP RLHPQCLSMN QRAALTEITD VLRAVCHAHI  360
LPLALTWIPC CYSEGDGDEI RRVRVRGGIT NSNEKSILCI DETACYVNDR TMQGFVHACV  420
EHHLEEGEGI AGKALKSNHP FFLHDVKVYD IYEYPLVHHA RKYGLNAAVA IRLRSTYTGD  480
DDYILEFFLP VNVKGSSEQQ LLLNNLSGTM QKMCKSLRTV SDAELAGVQG SNTGFQKGPI  540
PNSPQQRNSQ TASSDSELNS IENMPSDVFN RRNVGIEAEN PREQAPGSRR QMEKKRSTAE  600
KNVSLSVLQQ YFSGSLKDAA KSIGVCPTTL KRICRQHGIS RWPSRKINKV NRSLKKIQTV  660
LDSVQGVEGG LKYDPTTGGF VATGSIIQDF DAQKSRLFPE KSLPVQNSEL VTQDPVPVPS  720
VSCNNGESLA IKLEEDGCCI PTSHEEGVKK QNIPLMPQRD SKPIAIEGNK WGHSKNSLKL  780
ENSDCHFVSQ SSSSLAAADD MDTGVDGDDG IVEYNQHTSS SMTDSTNCSG STLRSSSSQS  840
FEEQKQPNMN ASSVENGSKI TVKATYKEDT IRFKFDPSVG CFQLYEEVAK RLKLQNGTFQ  900
LKYLDDEEEW VMLVSDADLR ECLEILDDIG TRSVKFMVRD TPFGVGSSGS SNCFLAGGL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008237190.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008237190.1	0.0	PREDICTED: protein NLP9-like
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A251R0A4	0.0	A0A251R0A4_PRUPE; Uncharacterized protein
STRING	XP_008237190.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3464	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]