PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008236876.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 366aa    MW: 40407.5 Da    PI: 7.1677
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008236876.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.5e-12189235455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++++k+Lq
  XP_008236876.1 189 EHIMAERKRREKLSERFIALSAIVPGL-----KKMDKASVLGDAIKHVKQLQ 235
                     699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.491185234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-9188235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-16189247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.28E-16189248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.42E-12190239No hitNo description
SMARTSM003534.8E-14191240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MDISSAKWFS ELGIDDYNFI PQCDLNALDE GFTAQDIATA LGENFKQSLS SESYSSYPTL  60
TAQNTKTTTT TTTTLSGGSS INKTSQTSFE RPAKQLKTSN WNSGITEHVS PKPSSSSSQI  120
LSFESSSSPS SKPQHFCNNF DSTLKPKDEA PSQINMQFSP LISKSSIKDC SQGTKRPYSI  180
TRTPSHAQEH IMAERKRREK LSERFIALSA IVPGLKKMDK ASVLGDAIKH VKQLQDRVKV  240
LEEQTKKRTV ESVVFVKKSQ LSADDGTSSC DESFDGHSDE ASLPEIEAKV SETDVLIRIH  300
CEKQKGFVVK ILSEVEKLQL SVVNSSILPF GNSALDITII AQMEDQFNMS VKDLARNLRV  360
ALLKFM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193198ERKRRE
2194199RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008236876.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008236876.10.0PREDICTED: transcription factor bHLH18
TrEMBLM5WBF90.0M5WBF9_PRUPE; Uncharacterized protein
STRINGXP_008236876.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-70bHLH family protein