PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_008236843.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | DBB | ||||||||
Protein Properties | Length: 208aa MW: 22910 Da PI: 6.012 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21 | 6.8e-07 | 4 | 33 | 5 | 34 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e ++ fC ++ lC++C ++ H XP_008236843.1 4 LCDVCEGAAAIVFCAADEAALCRSCDEKVH 33 7******99******************998 PP | |||||||
2 | zf-B_box | 27.5 | 6.6e-09 | 52 | 92 | 2 | 38 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38 + ++C+ +e+ ++ ++Ce +++ lC +C + H g H+ XP_008236843.1 52 DVPCCDICENAPAFFYCEVDGSSLCLQCDMIVHVGgkrtHR 92 5789**************************99966666776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.6E-8 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.997 | 1 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.3E-5 | 3 | 41 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.06E-6 | 3 | 45 | No hit | No description |
PROSITE profile | PS50119 | 9.03 | 51 | 96 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 5.7E-10 | 51 | 96 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 6.6E-7 | 52 | 92 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.04E-7 | 56 | 93 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0070370 | Biological Process | cellular heat acclimation | ||||
GO:0071483 | Biological Process | cellular response to blue light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 208 aa Download sequence Send to blast |
MRTLCDVCEG AAAIVFCAAD EAALCRSCDE KVHMCNKLAS RHVRVGLASP SDVPCCDICE 60 NAPAFFYCEV DGSSLCLQCD MIVHVGGKRT HRRYLLFRQR VEFPGDKPGR SEELGLQPLD 120 QKEVRKDHIQ PPSLSIRENQ QNCSASPVAV LDNNIVGDYK MDNRLIDLNT RPQRMNGQAS 180 TSPEQGLDVQ NGVNDESASV VPVGSFKR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_008236843.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008236843.1 | 1e-153 | PREDICTED: B-box zinc finger protein 18-like isoform X1 | ||||
Refseq | XP_021806305.1 | 1e-153 | B-box zinc finger protein 18-like isoform X1 | ||||
Refseq | XP_021806306.1 | 1e-153 | B-box zinc finger protein 18-like isoform X1 | ||||
Swissprot | C0SVM5 | 2e-80 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | A0A314URI9 | 1e-151 | A0A314URI9_PRUYE; B-box zinc finger protein 18-like isoform X1 | ||||
STRING | XP_008236843.1 | 1e-152 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2734 | 33 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38960.1 | 1e-82 | DBB family protein |