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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
XP_008236826.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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| Family |
BBR-BPC |
| Protein Properties |
Length: 311aa MW: 34905.5 Da PI: 10.0621 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_008236826.1 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 366.6 | 4.7e-112 | 1 | 311 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye..............pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalver 77
mdd ++e r+k yy+ ++ ++l +++++ms+iaerda+irern+alsek++a+a+rd+a+ qrd+ala+r+ a++er
XP_008236826.1 1 MDDGRQHEngRHKMdYYRgaaspwnmatqqqaKEpNALV--MNKKIMSIIAERDAAIRERNAALSEKNEALAARDEALRQRDEALAQRDTAMMER 93
677666556899988999999999999987653345666..99**************************************************** PP
GAGA_bind 78 dnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkkse 172
dn+++al +++n+ + p g +v +g+k +++ + + l++ + ++++++++a+pi+ ea +++++k+ +++k +++k ++kk +e
XP_008236826.1 94 DNAFAALHMRDNA--VNFPLGGGVQRGAKRLHHPSN-HSVTLAEAHYSTKDMHITDAFPISVISAEAVKSRQTKRAKENKASRASKPSRKKV-GE 184
*********9998..5678899999*******8888.889***********************99999999999777777777777766655.66 PP
GAGA_bind 173 kskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkk 267
+ +++ ++++ + k+e+++ dl+ln vs+Dest+PvPvCsCtG++rqCYkWGnGGWqS+CCtt +S+yPLP+++++r+aR++grKmS+++f++
XP_008236826.1 185 DLNRQASSDG--IKYKSEWDTHDLGLNLVSFDESTMPVPVCSCTGVPRQCYKWGNGGWQSSCCTTHMSMYPLPQMPNKRHARMGGRKMSGSVFTR 277
6666666666..57********************************************************************************* PP
GAGA_bind 268 lLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
lL++Laa+G+dls p+DLk++WA+HGtn+++ti+
XP_008236826.1 278 LLSRLAADGHDLSIPLDLKEYWARHGTNRYITIK 311
*********************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 311 aa
Download sequence Send
to blast |
MDDGRQHENG RHKMDYYRGA ASPWNMATQQ QAKEPNALVM NKKIMSIIAE RDAAIRERNA 60
ALSEKNEALA ARDEALRQRD EALAQRDTAM MERDNAFAAL HMRDNAVNFP LGGGVQRGAK 120
RLHHPSNHSV TLAEAHYSTK DMHITDAFPI SVISAEAVKS RQTKRAKENK ASRASKPSRK 180
KVGEDLNRQA SSDGIKYKSE WDTHDLGLNL VSFDESTMPV PVCSCTGVPR QCYKWGNGGW 240
QSSCCTTHMS MYPLPQMPNK RHARMGGRKM SGSVFTRLLS RLAADGHDLS IPLDLKEYWA 300
RHGTNRYITI K
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
