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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
XP_008236825.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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| Family |
BBR-BPC |
| Protein Properties |
Length: 329aa MW: 36822.6 Da PI: 10.2079 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_008236825.1 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 366.3 | 5.9e-112 | 19 | 329 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye..............pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalver 77
mdd ++e r+k yy+ ++ ++l +++++ms+iaerda+irern+alsek++a+a+rd+a+ qrd+ala+r+ a++er
XP_008236825.1 19 MDDGRQHEngRHKMdYYRgaaspwnmatqqqaKEpNALV--MNKKIMSIIAERDAAIRERNAALSEKNEALAARDEALRQRDEALAQRDTAMMER 111
677666556899988999999999999987653345666..99**************************************************** PP
GAGA_bind 78 dnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkkse 172
dn+++al +++n+ + p g +v +g+k +++ + + l++ + ++++++++a+pi+ ea +++++k+ +++k +++k ++kk +e
XP_008236825.1 112 DNAFAALHMRDNA--VNFPLGGGVQRGAKRLHHPSN-HSVTLAEAHYSTKDMHITDAFPISVISAEAVKSRQTKRAKENKASRASKPSRKKV-GE 202
*********9998..5678899999*******8888.889***********************99999999999777777777777766655.66 PP
GAGA_bind 173 kskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkk 267
+ +++ ++++ + k+e+++ dl+ln vs+Dest+PvPvCsCtG++rqCYkWGnGGWqS+CCtt +S+yPLP+++++r+aR++grKmS+++f++
XP_008236825.1 203 DLNRQASSDG--IKYKSEWDTHDLGLNLVSFDESTMPVPVCSCTGVPRQCYKWGNGGWQSSCCTTHMSMYPLPQMPNKRHARMGGRKMSGSVFTR 295
6666666666..57********************************************************************************* PP
GAGA_bind 268 lLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
lL++Laa+G+dls p+DLk++WA+HGtn+++ti+
XP_008236825.1 296 LLSRLAADGHDLSIPLDLKEYWARHGTNRYITIK 329
*********************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 329 aa
Download sequence Send
to blast |
MQSADSRRGQ TLAANNSKMD DGRQHENGRH KMDYYRGAAS PWNMATQQQA KEPNALVMNK 60
KIMSIIAERD AAIRERNAAL SEKNEALAAR DEALRQRDEA LAQRDTAMME RDNAFAALHM 120
RDNAVNFPLG GGVQRGAKRL HHPSNHSVTL AEAHYSTKDM HITDAFPISV ISAEAVKSRQ 180
TKRAKENKAS RASKPSRKKV GEDLNRQASS DGIKYKSEWD THDLGLNLVS FDESTMPVPV 240
CSCTGVPRQC YKWGNGGWQS SCCTTHMSMY PLPQMPNKRH ARMGGRKMSG SVFTRLLSRL 300
AADGHDLSIP LDLKEYWARH GTNRYITIK
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
