PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008236824.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 685aa    MW: 75871.2 Da    PI: 6.6343
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008236824.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.1e-0691115526
                     --SGGGGTS...--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartG...tCkyGdrCkFaHg 26 
                     +C+  a+ G    C+y d+C+F+H+
  XP_008236824.1  91 ICPEVAKRGdvsRCPYNDKCRFSHD 115
                     699999999999************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.03386117IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.333130155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.20.20.706.6E-73329572IPR013785Aldolase-type TIM barrel
SuperFamilySSF513951.1E-64333646No hitNo description
CDDcd028012.84E-91333568No hitNo description
PfamPF012071.4E-52336590IPR001269tRNA-dihydrouridine synthase
PROSITE patternPS011360417435IPR018517tRNA-dihydrouridine synthase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008033Biological ProcesstRNA processing
GO:0055114Biological Processoxidation-reduction process
GO:0017150Molecular FunctiontRNA dihydrouridine synthase activity
GO:0046872Molecular Functionmetal ion binding
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MDESPAETAP VPEVSNGWAD RTPEELVAKS IAPVKKQFLC PPPIRACSNE QNGAVSGGKT  60
KPAQTSVVKE KKSKRQLKRE RQQAVKSAVG ICPEVAKRGD VSRCPYNDKC RFSHDIEAYK  120
AQKPEDIEGD CPFMTAQETC PYGLACRFLG SHKDGVEAGD VSAHRRSSEM NGLSKDVQKL  180
LWKNKVKFPK ADAKLKALGL LGHANSKIKI LENKKDDQVV SNNCHVTDGN GCTELPNNSD  240
DKMELAAEIR EENGVDETFS LESRPSKKPR SVIEEEILSG EVDDGGANAT AEVVEPSCTS  300
PEPEATADIV SPESDRSLKL HPREKKLIDF REKLYLAPLT TVGNLPFRRV CKGLGADITC  360
GEMAMCTNLL QGQASEWALL RRHSSEDLFG VQICGAYPDT LARTVELVNQ ECTVDFIDIN  420
MGCPIDIVVN KGAGSALLTK PMRMKGIVQA ASGTVDCPIT IKVRTAYFEG KNRIDSLIAD  480
MGNWGASAVT IHGRSRQQRY SKLADWEYVY QCARKAPDAL PVLGNGDIFS YLDWNKHQAE  540
CPELSTCMIA RGALVKPWIF TEIKEQRHWD ISSGERLNIL KDYVRLGLEH WGSDTKGVET  600
TRRFLLEWLS YTCRYVPVGL LEVIPQRLSW RPPSYFGRDD LETLMASDSA ADWVRISEML  660
LGKVPDGFTF APKHKSNSYD RAENG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ei9_A3e-2833057727266tRNA-dihydrouridine synthase B
6ei9_B3e-2833057727266tRNA-dihydrouridine synthase B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCatalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008236824.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM3992550.0KM399255.1 Prunus persica FMN-linked oxidoreductases superfamily protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008236824.10.0PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
SwissprotQ9T0J60.0DUS3L_ARATH; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBLA0A314UGN30.0A0A314UGN3_PRUYE; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRINGXP_008236824.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108891212
Publications ? help Back to Top
  1. Szponarski W,Sommerer N,Boyer JC,Rossignol M,Gibrat R
    Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography.
    Proteomics, 2004. 4(2): p. 397-406
    [PMID:14760709]